AnchorFinder.cc File Reference

This code is intended to sift through the entire Protein Data Bank and find PDBs that fit certain criteria; in this case having loops with large numbers of cross-interface neighbors. More...

#include <core/pose/Pose.hh>
#include <core/pose/PDBPoseMap.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/util.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/PointGraph.hh>
#include <core/conformation/find_neighbors.hh>
#include <core/conformation/PointGraphData.hh>
#include <utility/graph/UpperEdgeGraph.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/Job.hh>
#include <protocols/moves/Mover.hh>
#include <devel/init.hh>
#include <utility/vector1.hh>
#include <basic/options/option.hh>
#include <basic/Tracer.hh>
#include <utility/exit.hh>
#include <utility/file/FileName.hh>
#include <utility/io/ozstream.hh>
#include <basic/options/keys/pose_metrics.OptionKeys.gen.hh>
#include <string>
#include <utility/excn/Exceptions.hh>

Classes
class	AnchorFinderMover
	AnchorFinder mover. More...

Typedefs
using	AnchorFinderMoverOP = utility::pointer::shared_ptr< AnchorFinderMover >

Functions
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.public.interface_design.anchored_design.AnchorFinder")
basic::options::IntegerOptionKey const	window_size ("window_size")
basic::options::RealOptionKey const	loopness ("loopness")
basic::options::RealOptionKey const	nbrs_per_residue ("nbrs_per_residue")
basic::options::StringOptionKey const	bestoutfile ("bestoutfile")

Detailed Description

This code is intended to sift through the entire Protein Data Bank and find PDBs that fit certain criteria; in this case having loops with large numbers of cross-interface neighbors.

Author

Steven Lewis

Typedef Documentation

using AnchorFinderMoverOP = utility::pointer::shared_ptr<AnchorFinderMover>

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References bestoutfile, utility::excn::Exception::display(), test.T009_Exceptions::e, devel::init(), loopness, nbrs_per_residue, basic::options::option, option, TR, and window_size.

Variable Documentation

basic::options::StringOptionKey const bestoutfile("bestoutfile")

Referenced by AnchorFinderMover::AnchorFinderMover(), and main().

basic::options::RealOptionKey const loopness("loopness")

Referenced by AnchorFinderMover::apply(), and main().

basic::options::RealOptionKey const nbrs_per_residue("nbrs_per_residue")

Referenced by AnchorFinderMover::apply(), and main().

basic::Tracer TR("apps.public.interface_design.anchored_design.AnchorFinder")

static

Referenced by AnchorFinderMover::apply(), and main().

basic::options::IntegerOptionKey const window_size("window_size")

Referenced by AnchorFinderMover::apply(), and main().