pyrosetta.distributed.packed_pose.core.PackedPose Class Reference

Public Member Functions
def	__init__
def	pose
def	update_scores

Public Attributes
	pickled_pose
	scores

Static Private Attributes
tuple	__slots__ = ("scores", "pickled_pose")

Detailed Description

Serializable, read-only access to a serialized pose object.

PackedPose functions as the equivalent of the "Pose" object within the pyrosetta.distributed
namespace. It holds a serialized pose object and a cached dictionary of scores extracted
from the serialized pose. It can be "unpacked" into a working pose or isomorphicly represented
as primitive datatypes or pandas data structures.

The "primitive" datatype represention of PackedPosed is a dict containing, at least, the
key "packed_pose" holding a base64-encoded unicode string of the pickled pose object. This
representation supports transparent interconversion between json and the packed format. In
contrast, PackedPose includes the *bytes* representation of the pose object and is not suitable
for serialization as text.

It should be noted that all pickled representations are *highly* compressible.

Constructor & Destructor Documentation

def pyrosetta.distributed.packed_pose.core.PackedPose.__init__	(		self,
			pose_or_pack
	)

Create a packed pose from pose, pack, or pickled bytes.

Referenced by pyrosetta.distributed.tasks.taskbase.TaskBase.__setstate__().

Member Function Documentation

def pyrosetta.distributed.packed_pose.core.PackedPose.pose

(

self

)

References pyrosetta.distributed.packed_pose.core.PackedPose.pickled_pose.

Referenced by pyrosetta.distributed.packed_pose.core.PackedPose.update_scores().

def pyrosetta.distributed.packed_pose.core.PackedPose.update_scores	(		self,
			score_dicts,
			score_kwargs
	)

References PDB_IOBenchmark.pose, ScoreBenchmark.pose, SmallMoverBenchmark.pose, ShearMoverBenchmark.pose, pyrosetta.distributed.packed_pose.core.PackedPose.pose(), pyrosetta.bindings.pose.PoseResidueAccessor.pose, pyrosetta.bindings.pose.PoseResidueLabelAccessor.pose, and pyrosetta.bindings.pose.PoseScoreAccessor.pose.

Member Data Documentation

tuple pyrosetta.distributed.packed_pose.core.PackedPose.__slots__ = ("scores", "pickled_pose")

staticprivate

pyrosetta.distributed.packed_pose.core.PackedPose.pickled_pose

Referenced by pyrosetta.distributed.packed_pose.core.PackedPose.pose().

pyrosetta.distributed.packed_pose.core.PackedPose.scores

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The documentation for this class was generated from the following file:

• src/python/PyRosetta/src/pyrosetta/distributed/packed_pose/core.py