pyrosetta.protocols.structure_search.alignment Namespace Reference

Functions
def	length_blocks
def	length_grouped_pairwise_metric
def	length_grouped_broadcast_metric
def	fragment_unaligned_pairwise_rmsd
def	fragment_pairwise_rmsd
def	fragment_unaligned_broadcast_rmsd
def	fragment_broadcast_rmsd

Function Documentation

def pyrosetta.protocols.structure_search.alignment.fragment_broadcast_rmsd	(		fragment_residues_a,
			fragment_residues_b
	)

Calculate aligned rmsd over given, potentially uniqual length, residue arrays.

References pyrosetta.protocols.structure_search.alignment.length_grouped_broadcast_metric().

def pyrosetta.protocols.structure_search.alignment.fragment_pairwise_rmsd

(

fragment_residues

)

Calculate pairwise rmsd over given, potentially uniqual length, residue arrays.

References pyrosetta.protocols.structure_search.alignment.length_grouped_pairwise_metric().

def pyrosetta.protocols.structure_search.alignment.fragment_unaligned_broadcast_rmsd	(		fragment_residues_a,
			fragment_residues_b
	)

Calculate unaligned rmsd over given, potentially uniqual length, residue arrays.

References pyrosetta.protocols.structure_search.alignment.length_grouped_broadcast_metric().

def pyrosetta.protocols.structure_search.alignment.fragment_unaligned_pairwise_rmsd

(

fragment_residues

)

Calculate pairwise rmsd over given, potentially uniqual length, residue arrays.

References pyrosetta.protocols.structure_search.alignment.length_grouped_pairwise_metric().

def pyrosetta.protocols.structure_search.alignment.length_blocks

(

jagged_array

)

References basic::options::OptionKeys::stepwise.enumerate.

Referenced by pyrosetta.protocols.structure_search.alignment.length_grouped_broadcast_metric(), and pyrosetta.protocols.structure_search.alignment.length_grouped_pairwise_metric().

def pyrosetta.protocols.structure_search.alignment.length_grouped_broadcast_metric	(		samp_a,
			samp_b,
			broadcast_metric
	)

References ObjexxFCL.len(), pyrosetta.protocols.structure_search.alignment.length_blocks(), basic::options::OptionKeys::in::file.list, and basic::options::OptionKeys::relax::range.range.

Referenced by pyrosetta.protocols.structure_search.alignment.fragment_broadcast_rmsd(), and pyrosetta.protocols.structure_search.alignment.fragment_unaligned_broadcast_rmsd().

def pyrosetta.protocols.structure_search.alignment.length_grouped_pairwise_metric	(		samples,
			pairwise_metric
	)

References ObjexxFCL.len(), pyrosetta.protocols.structure_search.alignment.length_blocks(), basic::options::OptionKeys::in::file.list, and basic::options::OptionKeys::relax::range.range.

Referenced by pyrosetta.protocols.structure_search.alignment.fragment_pairwise_rmsd(), and pyrosetta.protocols.structure_search.alignment.fragment_unaligned_pairwise_rmsd().