pyrosetta.tests.protocols.indexed_structure_store.test_search Namespace Reference

Classes
class	TestStructureSearch

Functions
def	fragment_start_indicies_from_residue_array
def	fragments_from_source_residues

Function Documentation

def pyrosetta.tests.protocols.indexed_structure_store.test_search.fragment_start_indicies_from_residue_array	(		fragment_length,
			source_residues
	)

References erraser_util.copy(), and basic::options::OptionKeys::relax::range.range.

Referenced by pyrosetta.tests.protocols.indexed_structure_store.test_search.fragments_from_source_residues().

def pyrosetta.tests.protocols.indexed_structure_store.test_search.fragments_from_source_residues	(		fragment_length,
			source_residues
	)

Extract fragment entries from residue array.

source_residues - Source residue data, include id, resn, and 'orient' entry containing atomic coordinates.

returns - (fragment_start_indices, fragment_data)

References pyrosetta.tests.protocols.indexed_structure_store.test_search.fragment_start_indicies_from_residue_array(), and basic::options::OptionKeys::relax::range.range.

Referenced by pyrosetta.tests.protocols.indexed_structure_store.test_search.TestStructureSearch.test_pair_search(), and pyrosetta.tests.protocols.indexed_structure_store.test_search.TestStructureSearch.test_single_search().