Public Member Functions
def	__init__

def	apply

Public Attributes
	residue_selector

	surface_type

	opacity

	color

	colorscheme

Detailed Description

Show the specified surface for each initialized `.pdb` file, `Pose` or `PackedPose` object.

Parameters
----------
first : optional
`residue_selector`

An instance of `pyrosetta.rosetta.core.select.residue_selector.ResidueSelector` to select residues
on which to apply the surface.
Default: None

second : optional
`surface_type`

`str` indicating surface type to be displayed. py3Dmol supports the following options:
"VDW": Van der Waals surface
"MS": Molecular surface
"SES": Solvent excluded surface
"SAS": Solvent accessible surface
Default: "VDW"

third : optional
`opacity`

`float` or `int` between 0 and 1 for opacity of the displayed surface.
Default: 0.5

fourth : optional
`color`

`str` indicating a standard color (e.g. "grey") of the surface to be displayed.
Either `color` or `colorscheme` may be specified, where `colorscheme` overrides `color`.
Default: None

fifth : optional
`colorscheme`

`str` indicating the color scheme of the surface to be displayed.
Either `color` or `colorscheme` may be specified, where `colorscheme` overrides `color`.
Options include:
A lower-case standard color followed by "Carbon" (e.g. "yellowCarbon")
"ssPyMOL": PyMol secondary colorscheme
"ssJmol": Jmol secondary colorscheme
"Jmol": Jmol primary colorscheme
"default": default colorscheme
"amino": amino acid colorscheme
"shapely": shapely protien colorscheme
"nucleic": nucleic acid colorscheme
"chain": standard chain colorscheme
"chainHetatm": chain Hetatm colorscheme
Default: None
Reference: https://3dmol.csb.pitt.edu/doc/types.html#ColorschemeSpec

Returns
-------
A Viewer instance.

Constructor & Destructor Documentation

def pyrosetta.distributed.viewer.modules.setSurface.__init__	(	self,
		residue_selector = `None`,
		surface_type = `"VDW"`,
		opacity = `0.5`,
		color = `None`,
		colorscheme = `None`
	)