mp_span_from_pdb.cc File Reference

#include <devel/init.hh>
#include <protocols/moves/Mover.hh>
#include <core/conformation/membrane/Span.hh>
#include <core/conformation/membrane/SpanningTopology.hh>
#include <protocols/membrane/util.hh>
#include <core/conformation/Residue.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/mp.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <apps/benchmark/performance/init_util.hh>
#include <core/types.hh>
#include <numeric/xyzVector.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/import_pose/import_pose.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/Job.hh>
#include <basic/Tracer.hh>
#include <utility/excn/Exceptions.hh>
#include <utility/string_util.hh>
#include <utility/io/ozstream.hh>
#include <cstdlib>
#include <string>
#include <cmath>

Functions
template<typename T_ >
void	show (utility::vector1< T_ > vector)
Pose	read_pose ()
Real	read_thickness ()
void	spanfile_for_each_chain (Pose &pose, Real thickness, std::string spanfile)
void	spanfile_from_pdb ()
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.public.membrane.mp_span_from_pdb")

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References utility::excn::Exception::display(), test.T009_Exceptions::e, devel::init(), and spanfile_from_pdb().

Pose read_pose

(

)

References CREATE_EXCEPTION, basic::Tracer::Debug, option, demo.D010_Pose_structure::pose, pyrosetta.distributed.io::pose_from_file, basic::options::OptionKeys::in::file::s, TR, and basic::options::OptionKeys::inout::dbms::user.

Referenced by spanfile_from_pdb().

Real read_thickness

(

)

References basic::Tracer::Debug, option, basic::options::OptionKeys::membrane::thickness, TR, and basic::options::OptionKeys::inout::dbms::user.

Referenced by spanfile_from_pdb().

template<typename T_ >

void show

(

utility::vector1< T_ >

vector

)

References test.T150_PyMOL_Integration::i, utility::to_string(), and TR.

Referenced by DockGlycansProtocol::apply(), GlycanClashCheckMover::show(), DockGlycansProtocol::show(), and pyrosetta.tests.distributed.test_viewer.TestViewer::test_viewer_with_poses().

void spanfile_for_each_chain	(	Pose &	pose,
		Real	thickness,
		std::string	spanfile
	)

References basic::options::OptionKeys::run::chain, test.T150_PyMOL_Integration::i, and utility::trim().

Referenced by spanfile_from_pdb().

void spanfile_from_pdb

(

)

References option, clean_pdb_keep_ligand::pdbfile, demo.D010_Pose_structure::pose, read_pose(), read_thickness(), basic::options::OptionKeys::in::file::s, local::secstruct, basic::options::OptionKeys::in::file::spanfile, spanfile_for_each_chain(), basic::options::OptionKeys::membrane::thickness, TR, and utility::trim().

Referenced by main().

Variable Documentation

basic::Tracer TR("apps.public.membrane.mp_span_from_pdb")

static

Referenced by read_pose(), read_thickness(), show(), and spanfile_from_pdb().