basic::options::OptionKeys::match Namespace Reference

Variables
BooleanOptionKey const	match
StringOptionKey const	lig_name
RealOptionKey const	bump_tolerance
FileOptionKey const	active_site_definition_by_residue
FileOptionKey const	active_site_definition_by_gridlig
FileOptionKey const	required_active_site_atom_names
FileOptionKey const	grid_boundary
FileOptionKey const	geometric_constraint_file
FileOptionKey const	scaffold_active_site_residues
FileOptionKey const	scaffold_active_site_residues_for_geomcsts
RealOptionKey const	euclid_bin_size
RealOptionKey const	euler_bin_size
BooleanOptionKey const	consolidate_matches
IntegerOptionKey const	output_matches_per_group
StringVectorOptionKey const	orientation_atoms
StringOptionKey const	output_format
StringOptionKey const	match_grouper
RealOptionKey const	grouper_downstream_rmsd
BooleanOptionKey const	output_matchres_only
IntegerVectorOptionKey const	geom_csts_downstream_output
BooleanOptionKey const	filter_colliding_upstream_residues
RealOptionKey const	upstream_residue_collision_tolerance
RealOptionKey const	upstream_residue_collision_score_cutoff
RealOptionKey const	upstream_residue_collision_Wfa_atr
RealOptionKey const	upstream_residue_collision_Wfa_rep
RealOptionKey const	upstream_residue_collision_Wfa_sol
BooleanOptionKey const	filter_upstream_downstream_collisions
RealOptionKey const	updown_collision_tolerance
RealOptionKey const	updown_residue_collision_score_cutoff
RealOptionKey const	updown_residue_collision_Wfa_atr
RealOptionKey const	updown_residue_collision_Wfa_rep
RealOptionKey const	updown_residue_collision_Wfa_sol
BooleanOptionKey const	define_match_by_single_downstream_positioning
IntegerOptionKey const	ligand_rotamer_index
BooleanOptionKey const	enumerate_ligand_rotamers
BooleanOptionKey const	only_enumerate_non_match_redundant_ligand_rotamers
BooleanOptionKey const	dynamic_grid_refinement
BooleanOptionKey const	build_round1_hits_twice

Variable Documentation

FileOptionKey const basic::options::OptionKeys::match::active_site_definition_by_gridlig

Referenced by add_rosetta_options_9().

FileOptionKey const basic::options::OptionKeys::match::active_site_definition_by_residue

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::match::build_round1_hits_twice

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::bump_tolerance

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::match::consolidate_matches

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::match::define_match_by_single_downstream_positioning

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::match::dynamic_grid_refinement

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::match::enumerate_ligand_rotamers

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::euclid_bin_size

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::euler_bin_size

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::match::filter_colliding_upstream_residues

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::match::filter_upstream_downstream_collisions

Referenced by add_rosetta_options_9().

IntegerVectorOptionKey const basic::options::OptionKeys::match::geom_csts_downstream_output

Referenced by add_rosetta_options_9().

FileOptionKey const basic::options::OptionKeys::match::geometric_constraint_file

Referenced by add_rosetta_options_9(), and create_theozyme_pdb().

FileOptionKey const basic::options::OptionKeys::match::grid_boundary

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::grouper_downstream_rmsd

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::match::lig_name

Referenced by add_rosetta_options_9(), and match_main().

IntegerOptionKey const basic::options::OptionKeys::match::ligand_rotamer_index

Referenced by add_rosetta_options_9(), and match_main().

BooleanOptionKey const basic::options::OptionKeys::match::match

Referenced by add_rosetta_options_9(), main(), and match_main().

StringOptionKey const basic::options::OptionKeys::match::match_grouper

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::match::only_enumerate_non_match_redundant_ligand_rotamers

Referenced by add_rosetta_options_9().

StringVectorOptionKey const basic::options::OptionKeys::match::orientation_atoms

Referenced by add_rosetta_options_9().

StringOptionKey const basic::options::OptionKeys::match::output_format

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::match::output_matches_per_group

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::match::output_matchres_only

Referenced by add_rosetta_options_9().

FileOptionKey const basic::options::OptionKeys::match::required_active_site_atom_names

Referenced by add_rosetta_options_9().

FileOptionKey const basic::options::OptionKeys::match::scaffold_active_site_residues

Referenced by add_rosetta_options_9().

FileOptionKey const basic::options::OptionKeys::match::scaffold_active_site_residues_for_geomcsts

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::updown_collision_tolerance

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::updown_residue_collision_score_cutoff

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::updown_residue_collision_Wfa_atr

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::updown_residue_collision_Wfa_rep

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::updown_residue_collision_Wfa_sol

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::upstream_residue_collision_score_cutoff

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::upstream_residue_collision_tolerance

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::upstream_residue_collision_Wfa_atr

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::upstream_residue_collision_Wfa_rep

Referenced by add_rosetta_options_9().

RealOptionKey const basic::options::OptionKeys::match::upstream_residue_collision_Wfa_sol

Referenced by add_rosetta_options_9().