demo.D110_DNA_interface Namespace Reference

Functions
def	sample_dna_interface
	Methods. More...

Variables
int	counter = 0
	AddPyMOLObserver(test_pose, True) More...
tuple	parser = optparse.OptionParser()
	INTERPRETING RESULTS. More...
string	default = '../test/data/dna_test.pdb'
string	help = 'the PDB file containing the DNA and protein to dock'
	pdb_filename = options.pdb_filename
	partners = options.partners
tuple	jobs = int(options.jobs)
	job_output = options.job_output

Function Documentation

def demo.D110_DNA_interface.sample_dna_interface	(		pdb_filename,
			partners,
			jobs = 1,
			job_output = 'dna_output'
	)

Methods.

Performs DNA-protein docking using Rosetta fullatom docking (DockingHighRes)
    on the DNA-protein complex in  <pdb_filename>  using the relative chain
    <partners>  .
    <jobs>  trajectories are performed with output structures named
    <job_output>_(job#).pdb.

References pyrosetta.create_score_function, pyrosetta.distributed.io.pose_from_file, and pyrosetta.Vector1().

Variable Documentation

int demo.D110_DNA_interface.counter = 0

AddPyMOLObserver(test_pose, True)

string demo.D110_DNA_interface.default = '../test/data/dna_test.pdb'

string demo.D110_DNA_interface.help = 'the PDB file containing the DNA and protein to dock'

demo.D110_DNA_interface.job_output = options.job_output

tuple demo.D110_DNA_interface.jobs = int(options.jobs)

tuple demo.D110_DNA_interface.parser = optparse.OptionParser()

INTERPRETING RESULTS.

COMMANDLINE COMPATIBILITY

demo.D110_DNA_interface.partners = options.partners

demo.D110_DNA_interface.pdb_filename = options.pdb_filename