test.T100_basic Namespace Reference

Variables
tuple	pose = Pose()
tuple	pose3 = pose_from_sequence("DSEEKFLRRIGRFGYGYGPYE",'centroid')
tuple	pose4 = pose_from_sequence("ARNDCEQGHILKMFPSTWYV", 'fa_standard')
tuple	res5 = pose.residue(5)
tuple	at5N = res5.atom('N')
tuple	at5CA = res5.atom("CA")
tuple	at5C = res5.atom("C")
tuple	atomN = AtomID(1,5)
tuple	atomCA = AtomID(2,5)
tuple	atomC = AtomID(3,5)
tuple	chm = rosetta.core.chemical.ChemicalManager.get_instance()
tuple	rts = chm.residue_type_set('fa_standard')
tuple	ala = rosetta.core.conformation.ResidueFactory.create_residue( rts.name_map('ALA') )

Variable Documentation

tuple test.T100_basic.ala = rosetta.core.conformation.ResidueFactory.create_residue( rts.name_map('ALA') )

Referenced by run_pep_prep().

tuple test.T100_basic.at5C = res5.atom("C")

tuple test.T100_basic.at5CA = res5.atom("CA")

tuple test.T100_basic.at5N = res5.atom('N')

tuple test.T100_basic.atomC = AtomID(3,5)

tuple test.T100_basic.atomCA = AtomID(2,5)

tuple test.T100_basic.atomN = AtomID(1,5)

tuple test.T100_basic.chm = rosetta.core.chemical.ChemicalManager.get_instance()

tuple test.T100_basic.pose = Pose()

tuple test.T100_basic.pose3 = pose_from_sequence("DSEEKFLRRIGRFGYGYGPYE",'centroid')

tuple test.T100_basic.pose4 = pose_from_sequence("ARNDCEQGHILKMFPSTWYV", 'fa_standard')

tuple test.T100_basic.res5 = pose.residue(5)

tuple test.T100_basic.rts = chm.residue_type_set('fa_standard')

Referenced by ScoreEachBenchmark.setUp().