ScoreEachBenchmark Class Reference

#include <ScoreEach.bench.hh>

Inheritance diagram for ScoreEachBenchmark:

Public Member Functions
	ScoreEachBenchmark (std::string name, core::scoring::ScoreType score_type, core::Size base_scale_factor, std::string infile="test_in.pdb", bool centroid=false)
virtual void	set_scorefxn (core::scoring::ScoreFunctionOP scorefxn)
void	setUp () override
void	run (core::Real scaleFactor) override
void	run_one_body_energy (core::Real scaleFactor)
void	run_short_ranged_two_body_energy (core::Real scaleFactor)
void	run_long_ranged_two_body_energy (core::Real scaleFactor)
void	tearDown () override
Public Member Functions inherited from PerformanceBenchmark
	PerformanceBenchmark (std::string name)
virtual	~PerformanceBenchmark ()
double	execute (core::Real scaleFactor)
std::string	name ()

Private Attributes
core::pose::PoseOP	pose_
core::scoring::ScoreType	score_type_
core::scoring::ScoreFunctionOP	scorefxn_
core::scoring::methods::EnergyMethodOP	enmeth_
core::scoring::methods::EnergyMethodType	enmethtype_
core::Size	base_scale_factor_
bool	setup_successful_
std::string	in_file_
bool	centroid_

Additional Inherited Members
Static Public Member Functions inherited from PerformanceBenchmark
static void	executeOneBenchmark (std::string const &name, core::Real scaleFactor=1)
static void	executeAllBenchmarks (core::Real scaleFactor=1)
static std::string	getReport ()
static std::string	getOneReport (std::string const &name)

Constructor & Destructor Documentation

ScoreEachBenchmark::ScoreEachBenchmark ( std::string  name, core::scoring::ScoreType  score_type, core::Size  base_scale_factor, std::string  infile = "test_in.pdb", bool  centroid = false  )

inline

Member Function Documentation

void ScoreEachBenchmark::run ( core::Real  scaleFactor )

inlineoverridevirtual

Reimplemented from PerformanceBenchmark.

References base_scale_factor_, enmethtype_, basic::Tracer::Error, test.T150_PyMOL_Integration::i, pose_, run_long_ranged_two_body_energy(), run_one_body_energy(), run_short_ranged_two_body_energy(), score_type_, basic::options::OptionKeys::DisulfideInsertion::scorefxn, setup_successful_, and TR.

void ScoreEachBenchmark::run_long_ranged_two_body_energy ( core::Real  scaleFactor )

inline

References base_scale_factor_, test.T200_Scoring::emap, enmeth_, basic::Tracer::Error, test.T200_Scoring::ii, pose_, res, score_type_, scorefxn_, basic::options::OptionKeys::frags::scoring::scoring, and TR.

Referenced by run().

void ScoreEachBenchmark::run_one_body_energy ( core::Real  scaleFactor )

inline

References base_scale_factor_, test.T200_Scoring::emap, enmeth_, basic::Tracer::Error, test.T200_Scoring::ii, pose_, res, score_type_, basic::options::OptionKeys::frags::scoring::scoring, and TR.

Referenced by run().

void ScoreEachBenchmark::run_short_ranged_two_body_energy ( core::Real  scaleFactor )

inline

References base_scale_factor_, test.T200_Scoring::emap, enmeth_, basic::Tracer::Error, test.T200_Scoring::ii, pose_, res, score_type_, scorefxn_, basic::options::OptionKeys::frags::scoring::scoring, and TR.

Referenced by run().

virtual void ScoreEachBenchmark::set_scorefxn ( core::scoring::ScoreFunctionOP  scorefxn )

inlinevirtual

References basic::options::OptionKeys::DisulfideInsertion::scorefxn, and scorefxn_.

Referenced by ScoreAnalyticEtableBenchmark::setUp().

void ScoreEachBenchmark::setUp ( )

inlineoverridevirtual

Reimplemented from PerformanceBenchmark.

References centroid_, enmeth_, enmethtype_, basic::Tracer::Error, in_file_, pose_, pyrosetta.distributed.io::pose_from_file, test.T100_basic::rts, score_type_, scorefxn_, setup_successful_, TR, and basic::Tracer::Warning.

Referenced by ScoreAnalyticEtableBenchmark::setUp().

void ScoreEachBenchmark::tearDown ( )

inlineoverridevirtual

Reimplemented from PerformanceBenchmark.

References enmeth_, pose_, and scorefxn_.

Member Data Documentation

core::Size ScoreEachBenchmark::base_scale_factor_

private

Referenced by run(), run_long_ranged_two_body_energy(), run_one_body_energy(), and run_short_ranged_two_body_energy().

bool ScoreEachBenchmark::centroid_

private

Referenced by setUp().

core::scoring::methods::EnergyMethodOP ScoreEachBenchmark::enmeth_

private

Referenced by run_long_ranged_two_body_energy(), run_one_body_energy(), run_short_ranged_two_body_energy(), setUp(), and tearDown().

core::scoring::methods::EnergyMethodType ScoreEachBenchmark::enmethtype_

private

Referenced by run(), and setUp().

std::string ScoreEachBenchmark::in_file_

private

Referenced by setUp().

core::pose::PoseOP ScoreEachBenchmark::pose_

private

Referenced by sidechain_cst_3.Residue::pose_num(), run(), run_long_ranged_two_body_energy(), run_one_body_energy(), run_short_ranged_two_body_energy(), setUp(), and tearDown().

core::scoring::ScoreType ScoreEachBenchmark::score_type_

private

Referenced by run(), run_long_ranged_two_body_energy(), run_one_body_energy(), run_short_ranged_two_body_energy(), and setUp().

core::scoring::ScoreFunctionOP ScoreEachBenchmark::scorefxn_

private

Referenced by run_long_ranged_two_body_energy(), run_short_ranged_two_body_energy(), set_scorefxn(), setUp(), and tearDown().

bool ScoreEachBenchmark::setup_successful_

private

Referenced by run(), and setUp().

---

The documentation for this class was generated from the following file:

• src/apps/benchmark/performance/ScoreEach.bench.hh