basic::options::OptionKeys::relax Namespace Reference

Namespaces
	centroid
	range

Variables
BooleanOptionKey const	relax
BooleanOptionKey const	fast
BooleanOptionKey const	thorough
BooleanOptionKey const	centroid_mode
IntegerOptionKey const	default_repeats
BooleanOptionKey const	dualspace
BooleanOptionKey const	cyclic_peptide
BooleanOptionKey const	ramady
RealOptionKey const	ramady_rms_limit
RealOptionKey const	ramady_cutoff
IntegerOptionKey const	ramady_max_rebuild
BooleanOptionKey const	ramady_force
FileOptionKey const	script
IntegerOptionKey const	script_max_accept
BooleanOptionKey const	superimpose_to_native
FileOptionKey const	superimpose_to_file
BooleanOptionKey const	constrain_relax_to_native_coords
BooleanOptionKey const	constrain_relax_to_start_coords
BooleanOptionKey const	coord_constrain_sidechains
RealOptionKey const	sc_cst_maxdist
BooleanOptionKey const	limit_aroma_chi2
BooleanOptionKey const	respect_resfile
BooleanOptionKey const	use_explicit_water
BooleanOptionKey const	movemap_disables_packing_of_fixed_chi_positions
BooleanOptionKey const	bb_move
BooleanOptionKey const	chi_move
BooleanOptionKey const	jump_move
BooleanOptionKey const	dna_move
BooleanOptionKey const	fix_omega
BooleanOptionKey const	minimize_bond_lengths
BooleanOptionKey const	minimize_bond_angles
IntegerOptionKey const	minimize_bondlength_subset
IntegerOptionKey const	minimize_bondangle_subset
StringOptionKey const	min_type
BooleanOptionKey const	cartesian
RealOptionKey const	chainbreak_weight
RealOptionKey const	linear_chainbreak_weight
RealOptionKey const	overlap_chainbreak_weight
BooleanOptionKey const	classic
FileOptionKey const	sequence_file
BooleanOptionKey const	quick
BooleanOptionKey const	sequence
IntegerOptionKey const	minirelax_repeats
RealOptionKey const	minirelax_sdev
BooleanOptionKey const	wobblemoves
FileOptionKey const	constrain_relax_segments
RealOptionKey const	coord_cst_width
RealOptionKey const	coord_cst_stdev
BooleanOptionKey const	ramp_constraints
RealOptionKey const	energycut
BooleanOptionKey const	mini
IntegerOptionKey const	stage1_ramp_cycles
IntegerOptionKey const	stage1_ramp_inner_cycles
IntegerOptionKey const	stage2_repack_period
IntegerOptionKey const	stage2_cycles
RealOptionKey const	min_tolerance
IntegerOptionKey const	stage3_cycles
RealOptionKey const	cycle_ratio
RealOptionKey const	filter_stage2_beginning
RealOptionKey const	filter_stage2_quarter
RealOptionKey const	filter_stage2_half
RealOptionKey const	filter_stage2_end

Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::relax::bb_move

Referenced by add_rosetta_options_12(), and Minimize::apply().

BooleanOptionKey const basic::options::OptionKeys::relax::cartesian

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::centroid_mode

Referenced by add_rosetta_options_12(), and rebuild_test().

RealOptionKey const basic::options::OptionKeys::relax::chainbreak_weight

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::chi_move

Referenced by add_rosetta_options_12(), and Minimize::apply().

BooleanOptionKey const basic::options::OptionKeys::relax::classic

Referenced by add_rosetta_options_12().

FileOptionKey const basic::options::OptionKeys::relax::constrain_relax_segments

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::constrain_relax_to_native_coords

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::constrain_relax_to_start_coords

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::coord_constrain_sidechains

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::coord_cst_stdev

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::coord_cst_width

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::cycle_ratio

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::cyclic_peptide

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::relax::default_repeats

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::dna_move

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::dualspace

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::energycut

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::fast

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::filter_stage2_beginning

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::filter_stage2_end

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::filter_stage2_half

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::filter_stage2_quarter

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::fix_omega

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::jump_move

Referenced by add_rosetta_options_12(), and Minimize::apply().

BooleanOptionKey const basic::options::OptionKeys::relax::limit_aroma_chi2

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::linear_chainbreak_weight

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::min_tolerance

Referenced by add_rosetta_options_12(), Minimize::apply(), NCMinimize::apply(), and main().

StringOptionKey const basic::options::OptionKeys::relax::min_type

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::mini

Referenced by add_rosetta_options_12(), and main().

BooleanOptionKey const basic::options::OptionKeys::relax::minimize_bond_angles

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::minimize_bond_lengths

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::relax::minimize_bondangle_subset

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::relax::minimize_bondlength_subset

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::relax::minirelax_repeats

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::minirelax_sdev

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::movemap_disables_packing_of_fixed_chi_positions

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::overlap_chainbreak_weight

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::quick

Referenced by add_rosetta_options_12(), and main().

BooleanOptionKey const basic::options::OptionKeys::relax::ramady

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::ramady_cutoff

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::ramady_force

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::relax::ramady_max_rebuild

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::ramady_rms_limit

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::ramp_constraints

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::relax

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::respect_resfile

Referenced by add_rosetta_options_12().

RealOptionKey const basic::options::OptionKeys::relax::sc_cst_maxdist

Referenced by add_rosetta_options_12().

FileOptionKey const basic::options::OptionKeys::relax::script

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::relax::script_max_accept

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::sequence

Referenced by add_rosetta_options_12(), MPDomainAssembly::apply(), check_all_poses_have_the_same_sequence(), composite_sequences_from_cmd_line(), create_base_pair_step_database_test(), get_n_mer_maltose(), get_n_mer_polyalanine(), main(), my_main(), nucleobase_probe_score_test(), Prepare(), read_fasta(), rna_build_helix_test(), rna_denovo(), rna_fullatom_minimize_test(), rna_motif_test(), rna_thread_test(), DockFragmentsMover::run(), run_pep_prep(), sequences_from_cmd_line(), pyrosetta.tests.bindings.core.test_pose.TestPosesToSilent::test_poses_to_silent(), pyrosetta.tests.distributed.test_dask.TestDaskDistribution::test_rosetta_scripts(), and pyrosetta.tests.distributed.test_smoke.SmokeTestDistributed::test_silent_io().

FileOptionKey const basic::options::OptionKeys::relax::sequence_file

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::relax::stage1_ramp_cycles

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::relax::stage1_ramp_inner_cycles

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::relax::stage2_cycles

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::relax::stage2_repack_period

Referenced by add_rosetta_options_12().

IntegerOptionKey const basic::options::OptionKeys::relax::stage3_cycles

Referenced by add_rosetta_options_12().

FileOptionKey const basic::options::OptionKeys::relax::superimpose_to_file

Referenced by add_rosetta_options_12(), and main().

BooleanOptionKey const basic::options::OptionKeys::relax::superimpose_to_native

Referenced by add_rosetta_options_12(), and main().

BooleanOptionKey const basic::options::OptionKeys::relax::thorough

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::use_explicit_water

Referenced by add_rosetta_options_12().

BooleanOptionKey const basic::options::OptionKeys::relax::wobblemoves

Referenced by add_rosetta_options_12().