basic::options::OptionKeys::cm Namespace Reference

Namespaces
	hybridize
	sanitize

Variables
BooleanOptionKey const	cm
BooleanOptionKey const	start_models_only
StringOptionKey const	aln_format
BooleanOptionKey const	recover_side_chains
FileVectorOptionKey const	steal_extra_residues
StringOptionKey const	loop_mover
IntegerOptionKey const	loop_close_level
IntegerOptionKey const	min_loop_size
IntegerOptionKey const	max_loop_rebuild
RealOptionKey const	loop_rebuild_filter
RealOptionKey const	aln_length_filter_quantile
IntegerOptionKey const	aln_length_filter
StringVectorOptionKey const	seq_score
StringOptionKey const	aligner
RealOptionKey const	min_gap_open
RealOptionKey const	max_gap_open
RealOptionKey const	min_gap_extend
RealOptionKey const	max_gap_extend
IntegerOptionKey const	nn
FileVectorOptionKey const	ev_map
FileVectorOptionKey const	hh_map
IntegerVectorOptionKey const	seeds
IntegerOptionKey const	nremain_reset
RealVectorOptionKey const	quota_per_silent
RealOptionKey const	similarity_cut
RealOptionKey const	similarity_limit
RealOptionKey const	refsimilarity_cut

Variable Documentation

StringOptionKey const basic::options::OptionKeys::cm::aligner

Referenced by add_rosetta_options_6().

StringOptionKey const basic::options::OptionKeys::cm::aln_format

Referenced by add_rosetta_options_6(), and main().

IntegerOptionKey const basic::options::OptionKeys::cm::aln_length_filter

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::aln_length_filter_quantile

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cm::cm

Referenced by add_rosetta_options_6(), main(), and processRegions().

FileVectorOptionKey const basic::options::OptionKeys::cm::ev_map

Referenced by add_rosetta_options_6().

FileVectorOptionKey const basic::options::OptionKeys::cm::hh_map

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cm::loop_close_level

Referenced by add_rosetta_options_6().

StringOptionKey const basic::options::OptionKeys::cm::loop_mover

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::loop_rebuild_filter

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::max_gap_extend

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::max_gap_open

Referenced by add_rosetta_options_6().

IntegerOptionKey const basic::options::OptionKeys::cm::max_loop_rebuild

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::min_gap_extend

Referenced by add_rosetta_options_6(), and main().

RealOptionKey const basic::options::OptionKeys::cm::min_gap_open

Referenced by add_rosetta_options_6(), and main().

IntegerOptionKey const basic::options::OptionKeys::cm::min_loop_size

Referenced by add_rosetta_options_6(), and main().

IntegerOptionKey const basic::options::OptionKeys::cm::nn

Referenced by add_rosetta_options_6(), numeric::linear_algebra::qzval(), and numeric::linear_algebra::qzvec().

IntegerOptionKey const basic::options::OptionKeys::cm::nremain_reset

Referenced by add_rosetta_options_6(), and main().

RealVectorOptionKey const basic::options::OptionKeys::cm::quota_per_silent

Referenced by add_rosetta_options_6(), and get_quota_per_silent().

BooleanOptionKey const basic::options::OptionKeys::cm::recover_side_chains

Referenced by add_rosetta_options_6().

RealOptionKey const basic::options::OptionKeys::cm::refsimilarity_cut

Referenced by add_rosetta_options_6(), and main().

IntegerVectorOptionKey const basic::options::OptionKeys::cm::seeds

Referenced by add_rosetta_options_6(), and main().

StringVectorOptionKey const basic::options::OptionKeys::cm::seq_score

Referenced by add_rosetta_options_6(), and main().

RealOptionKey const basic::options::OptionKeys::cm::similarity_cut

Referenced by add_rosetta_options_6(), and main().

RealOptionKey const basic::options::OptionKeys::cm::similarity_limit

Referenced by add_rosetta_options_6().

BooleanOptionKey const basic::options::OptionKeys::cm::start_models_only

Referenced by add_rosetta_options_6().

FileVectorOptionKey const basic::options::OptionKeys::cm::steal_extra_residues

Referenced by add_rosetta_options_6().