pyrosetta.distributed.viewer.modules.setHydrogens Class Reference

Public Member Functions
def	__init__
def	apply

Public Attributes
	color
	radius
	polar_only

Detailed Description

Show all or only polar hydrogen atoms in each initialized `.pdb` file, `Pose` or `PackedPose` object.

Parameters
----------
first : optional
    `color`

    `str` indicating a standard color (e.g. "grey").
    Default: "white"

second : optional
    `radius`

    `float` or `int` indicating the radius of the hydrogen atom stick represnetations.
    Default: 0.05

third : optional
    `polar_only`

    `True` or `False`. `True` to show only polar hydrogen atoms, and `False` to show all hydrogen atoms.
    Default: False

Returns
-------
A Viewer instance.

Constructor & Destructor Documentation

def pyrosetta.distributed.viewer.modules.setHydrogens.__init__	(		self,
			color = "white",
			radius = 0.05,
			polar_only = False
	)

Referenced by pyrosetta.distributed.tasks.taskbase.TaskBase.__setstate__().

Member Function Documentation

def pyrosetta.distributed.viewer.modules.setHydrogens.apply	(		self,
			viewer,
			pose,
			pdbstring
	)

References pyrosetta.distributed.viewer.modules._pdbstring_to_pose(), basic::options::OptionKeys::out::path.all, pyrosetta.distributed.viewer.modules.setBackgroundColor.color, pyrosetta.distributed.viewer.modules.setDisulfides.color, pyrosetta.distributed.viewer.modules.setHydrogenBonds.color, pyrosetta.distributed.viewer.modules.setHydrogens.color, ObjexxFCL.len(), pyrosetta.distributed.viewer.modules.setHydrogens.polar_only, pyrosetta.distributed.viewer.modules.setDisulfides.radius, pyrosetta.distributed.viewer.modules.setHydrogenBonds.radius, basic::sampling::orientations::QuatDBMetadata.radius, pyrosetta.distributed.viewer.modules.setHydrogens.radius, basic::options::OptionKeys::relax::range.range, and basic::options::OptionKeys::in::file.xyz.

Referenced by pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask.execute().

Member Data Documentation

pyrosetta.distributed.viewer.modules.setHydrogens.color

Referenced by pyrosetta.distributed.viewer.modules.setHydrogens.apply(), and pyrosetta.distributed.viewer.modules.setSurface.apply().

pyrosetta.distributed.viewer.modules.setHydrogens.polar_only

Referenced by pyrosetta.distributed.viewer.modules.setHydrogens.apply().

pyrosetta.distributed.viewer.modules.setHydrogens.radius

Referenced by pyrosetta.distributed.viewer.modules.setHydrogens.apply(), pyrosetta.distributed.viewer.modules.setStyle.apply(), and test.Workshop9_my_shapes.MyCircle.area().

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The documentation for this class was generated from the following file:

• src/python/PyRosetta/src/pyrosetta/distributed/viewer/modules.py