basic::options::OptionKeys::frags::contacts Namespace Reference

Variables
BooleanOptionKey const	contacts
IntegerOptionKey const	min_seq_sep
RealVectorOptionKey const	dist_cutoffs
RealOptionKey const	centroid_distance_scale_factor
StringVectorOptionKey const	type
IntegerOptionKey const	neighbors
BooleanOptionKey const	output_all

Variable Documentation

RealOptionKey const basic::options::OptionKeys::frags::contacts::centroid_distance_scale_factor

Referenced by add_rosetta_options_9().

BooleanOptionKey const basic::options::OptionKeys::frags::contacts::contacts

Referenced by add_rosetta_options_9(), get_contact_devs(), get_contact_list(), process_for_motifs(), and report_and_dump().

RealVectorOptionKey const basic::options::OptionKeys::frags::contacts::dist_cutoffs

Referenced by add_rosetta_options_9().

IntegerOptionKey const basic::options::OptionKeys::frags::contacts::min_seq_sep

Referenced by add_rosetta_options_9(), register_options(), and run().

IntegerOptionKey const basic::options::OptionKeys::frags::contacts::neighbors

Referenced by add_rosetta_options_9(), and find_residues_around_mutation().

BooleanOptionKey const basic::options::OptionKeys::frags::contacts::output_all

Referenced by add_rosetta_options_9().

StringVectorOptionKey const basic::options::OptionKeys::frags::contacts::type

Referenced by pyrosetta.distributed.utility.pickle::__cereal_setstate__(), pyrosetta.distributed.cluster.exceptions.InputFileError::__init__(), pyrosetta.distributed.cluster.exceptions.OutputError::__init__(), pyrosetta.distributed.cluster.converter_tasks::_is_packed(), pyrosetta.distributed.cluster.converter_tasks::_parse_dict(), pyrosetta.distributed.cluster.converters::_parse_environment(), pyrosetta.distributed.cluster.converter_tasks::_parse_iterable(), pyrosetta.distributed.cluster.converters::_parse_protocols(), pyrosetta.distributed.cluster.converters::_parse_pyrosetta_build(), pyrosetta.distributed.cluster.converters::_parse_scratch_dir(), pyrosetta.distributed.cluster.converters::_parse_sha1(), pyrosetta.distributed.cluster.converters::_parse_system_info(), pyrosetta.distributed.cluster.converters::_parse_tasks(), basic::datacache::DataMap::add(), basic::datacache::ConstDataMap::add(), binder::add_relevant_include_for_decl(), add_rosetta_options_9(), test.T850_SubClassing.My_New_Mover::apply(), utility::json_spirit::Value_impl< Config >::check_type(), pyrosetta::defineEnergyMethodCreator(), utility::from_string(), basic::datacache::HierarchicalDataMap::get(), GlycanClashCheckMover::get_name(), DockGlycansProtocol::get_name(), basic::datacache::HierarchicalDataMap::get_or_null(), utility::json_spirit::Value_impl< Config >::get_real(), basic::datacache::get_set_from_datamap(), options_class.Option::getDoxygenRow(), options_class.Option::getMarkdownRow(), options_class.Option::getOptionCC(), options_class.Option::getWikiTableRow(), harvest_scores(), pyrosetta.distributed.viewer.core::init(), GlycanClashCheckMover::init(), DockGlycansProtocol::init(), utility::json_spirit::Value_impl< Config >::is_null(), LigandRepackMinimizeProtocol::LigandRepackMinimizeProtocol(), main(), fmt::internal::make_type(), fmt::internal::MakeArg< Formatter >::MakeArg(), name2elt(), pyrosetta.bindings.energies::nonzero_weights_dtype(), utility::json_spirit::Value_impl< Config >::operator==(), basic::datacache::DataMap::operator[](), basic::datacache::ConstDataMap::operator[](), fmt::ArgList::operator[](), options_class::Option_Group(), utility::xsd_util::output_all_tag_options(), pyrosetta.distributed.cluster.converter_tasks::parse_client(), pyrosetta.distributed.cluster.converter_tasks::parse_decoy_name(), pyrosetta.distributed.cluster.converter_tasks::parse_input_packed_pose(), pyrosetta.distributed.cluster.converter_tasks::parse_instance_kwargs(), pyrosetta.distributed.cluster.converter_tasks::parse_scorefile(), numeric::read_tensor_from_file(), binder::Context::request_bindings(), ScoreFragmentSetMover::run(), FragmentAssemblyMover::run(), basic::datacache::HierarchicalDataMap::set(), binder::simplify_std_class_name(), utility::string_split(), rosetta_binders::stringstream_add_on_binder(), erraser_util::subprocess_call(), erraser_util::subprocess_out(), pyrosetta.tests.distributed.cluster.test_reproducibility.TestReproducibility::test_reproducibility_packer_nstruct(), pyrosetta.distributed.packed_pose.core::to_dict(), pyrosetta.distributed.packed_pose.core::to_packed(), pyrosetta.distributed.packed_pose.core::to_pose(), fmt::ArgList::type(), options_class::wrapCStrig(), fmt::BasicWriter< Char >::write_double(), and numeric::write_tensor_to_file().