Rosetta: pyrosetta.distributed.cluster.io.IO Class Reference

Inheritance diagram for pyrosetta.distributed.cluster.io.IO:

Inheritance graph

Static Public Attributes
tuple	instance_state = dict(zip(self.__slots__, self.__getstate__()))

tuple	instance_kwargs = copy.deepcopy(instance_state)

list	out = [cls._format_result(results)]

Private Member Functions
def	_get_instance_and_metadata

def	_get_output_dir

def	_parse_results

def	_process_kwargs

def	_save_results

def	_write_environment_file

Static Private Member Functions
def	_format_result

Detailed Description

Input/Output methods for PyRosettaCluster.

Member Function Documentation

def pyrosetta.distributed.cluster.io.IO._format_result ( result )

staticprivate

References pyrosetta.distributed.cluster.io.IO._parse_results().

def pyrosetta.distributed.cluster.io.IO._get_instance_and_metadata	(		self,
			kwargs
	)

private

Referenced by pyrosetta.distributed.cluster.io.IO._save_results().

def pyrosetta.distributed.cluster.io.IO._get_output_dir	(		self,
			decoy_dir
	)

private

References ObjexxFCL.len(), and basic::options::OptionKeys::in::file.list.

Referenced by pyrosetta.distributed.cluster.io.IO._save_results().

def pyrosetta.distributed.cluster.io.IO._parse_results	(		cls,
			results
	)

private

References basic::options::OptionKeys::score.empty.

Referenced by pyrosetta.distributed.cluster.io.IO._format_result(), and pyrosetta.distributed.cluster.io.IO._save_results().

def pyrosetta.distributed.cluster.io.IO._process_kwargs	(		self,
			kwargs
	)

private

References ObjexxFCL.len(), basic::options::OptionKeys::in::file.list, pyrosetta.distributed.cluster.core.PyRosettaCluster.protocols_key, and basic::options::OptionKeys::relax::range.range.

Referenced by pyrosetta.distributed.cluster.io.IO._save_results().

def pyrosetta.distributed.cluster.io.IO._save_results	(		self,
			results
	)

private

References pyrosetta.distributed.cluster.io.IO._get_instance_and_metadata(), pyrosetta.distributed.cluster.io.IO._get_output_dir(), pyrosetta.distributed.cluster.io.IO._parse_results(), pyrosetta.distributed.cluster.io.IO._process_kwargs(), utility::io::orstream.compressed(), utility::io::ocstream.compressed(), utility::io::irstream.compressed(), utility::io::icstream.compressed(), pyrosetta.distributed.cluster.core.PyRosettaCluster.compressed, utility::io::ozstream.compressed(), utility::io::izstream.compressed(), ObjexxFCL::Cstring.compressed(), ObjexxFCL::Fstring.compressed(), pyrosetta.distributed.cluster.core.PyRosettaCluster.decoy_path, pyrosetta.distributed.cluster.core.PyRosettaCluster.dry_run, pyrosetta.distributed.cluster.core.PyRosettaCluster.environment_file, fmt.join(), basic::database.open(), pyrosetta.distributed.cluster.core.PyRosettaCluster.scorefile_path, pyrosetta.distributed.cluster.core.PyRosettaCluster.simulation_name, and pyrosetta.distributed.cluster.core.PyRosettaCluster.simulation_records_in_scorefile.

Referenced by pyrosetta.distributed.cluster.core.PyRosettaCluster.distribute().

def pyrosetta.distributed.cluster.io.IO._write_environment_file	(		self,
			filename
	)

private

References pyrosetta.distributed.cluster.core.PyRosettaCluster.dry_run, pyrosetta.distributed.cluster.core.PyRosettaCluster.environment, basic::database.open(), and pyrosetta.distributed.cluster.core.PyRosettaCluster.simulation_records_in_scorefile.

Referenced by pyrosetta.distributed.cluster.core.PyRosettaCluster.__attrs_post_init__().

Member Data Documentation

tuple pyrosetta.distributed.cluster.io.IO.instance_kwargs = copy.deepcopy(instance_state)

static

tuple pyrosetta.distributed.cluster.io.IO.instance_state = dict(zip(self.__slots__, self.__getstate__()))

static

list pyrosetta.distributed.cluster.io.IO.out = [cls._format_result(results)]

static

The documentation for this class was generated from the following file:

src/python/PyRosetta/src/pyrosetta/distributed/cluster/io.py