Rosetta  2021.16
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apps → utility Relation

File in src/appsIncludes file in src/utility
public / AbinitioRelax.ccexcn / Exceptions.hh
public / AbinitioRelax.ccvector1.hh
public / rna / util / analyze_base_pairing.ccexcn / Exceptions.hh
public / rna / util / analyze_base_pairing.ccio / ozstream.hh
public / rna / util / analyze_base_pairing.ccvector1.hh
public / interface_design / anchored_design / AnchoredDesign.ccexcn / Exceptions.hh
public / interface_design / anchored_design / AnchoredPDBCreator.ccexcn / Exceptions.hh
public / interface_design / anchored_design / AnchoredPDBCreator.ccio / izstream.hh
public / interface_design / anchored_design / AnchoredPDBCreator.ccvector1.hh
public / interface_design / anchored_design / AnchorFinder.ccexcn / Exceptions.hh
public / interface_design / anchored_design / AnchorFinder.ccexit.hh
public / interface_design / anchored_design / AnchorFinder.ccfile / FileName.hh
public / interface_design / anchored_design / AnchorFinder.ccio / ozstream.hh
public / interface_design / anchored_design / AnchorFinder.ccgraph / UpperEdgeGraph.hh
public / interface_design / anchored_design / AnchorFinder.ccvector1.hh
public / antibody / antibody_CR_paratope.ccexcn / Exceptions.hh
public / antibody / antibody_CR_paratope.ccfile / FileName.hh
public / antibody / antibody_designer.ccexcn / Exceptions.hh
public / antibody / antibody_graft.ccexcn / Exceptions.hh
public / antibody / antibody_graft.ccvector1.hh
public / antibody / antibody_H3.ccexcn / Exceptions.hh
public / antibody / antibody_H3.ccvector1.hh
public / antibody / antibody_legacy.ccexcn / Exceptions.hh
public / antibody / antibody_legacy.ccvector1.hh
public / antibody / antibody_numbering_converter.ccexcn / Exceptions.hh
public / antibody / antibody_numbering_converter.ccoptions / OptionCollection.hh
public / comparative_modeling / avrg_silent.ccexcn / Exceptions.hh
public / comparative_modeling / avrg_silent.ccvector1.hh
public / backrub.ccexcn / Exceptions.hh
public / backrub.ccvector1.hh
public / sewing / ligand_sewing_tools / backside_hbond_finder.ccexcn / Exceptions.hh
public / sewing / ligand_sewing_tools / backside_hbond_finder.ccfixedsizearray1.hh
public / sewing / ligand_sewing_tools / backside_hbond_finder.ccstring_util.hh
public / sewing / ligand_sewing_tools / backside_hbond_finder.ccvector1.hh
public / sewing / ligand_sewing_tools / backside_hbond_finder.ccVirtualBase.hh
public / analysis / batch_distances.ccexcn / Exceptions.hh
public / analysis / batch_distances.ccfile / FileName.hh
public / analysis / batch_distances.ccstring_util.hh
public / analysis / batch_distances.ccvector1.hh
public / design / beta_peptide_modeling.ccexcn / Exceptions.hh
public / design / beta_peptide_modeling.ccio / izstream.hh
public / design / beta_peptide_modeling.cctools / make_vector1.hh
public / design / beta_peptide_modeling.ccio / ozstream.hh
public / design / beta_peptide_modeling.ccvector1.hh
public / stepwise / build_full_model.ccexcn / Exceptions.hh
public / stepwise / build_full_model.ccvector1.hh
public / flexpep_docking / BuildPeptide.ccexcn / Exceptions.hh
public / flexpep_docking / BuildPeptide.ccvector1.hh
public / scenarios / ca_to_allatom.ccexcn / Exceptions.hh
public / scenarios / ca_to_allatom.ccoptions / OptionCollection.hh
public / scenarios / ca_to_allatom.ccvector1.hh
public / nmr / calc_nmr_tensor.ccexcn / Exceptions.hh
public / calculate_sasa.ccexcn / Exceptions.hh
public / calculate_sasa.ccstring_util.hh
public / calculate_sasa.ccvector1.hh
public / clustering / calibur.ccstring_constants.hh
public / clustering / calibur.ccstring_util.hh
public / ddg / cartesian_ddg.ccexcn / Exceptions.hh
public / ddg / cartesian_ddg.ccexit.hh
public / ddg / cartesian_ddg.ccfile / file_sys_util.hh
public / ddg / cartesian_ddg.ccfile / FileName.hh
public / ddg / cartesian_ddg.ccio / izstream.hh
public / ddg / cartesian_ddg.ccio / ozstream.hh
public / ddg / cartesian_ddg.ccvector0.hh
public / ddg / cartesian_ddg.ccvector1.hh
public / clustering / cluster.ccexcn / Exceptions.hh
public / clustering / cluster.ccvector1.hh
public / comparative_modeling / cluster_alns.ccexcn / Exceptions.hh
public / comparative_modeling / cluster_alns.ccvector1.hh
public / combine_silent.ccexcn / Exceptions.hh
public / combine_silent.ccvector1.hh
public / analysis / contactMap.cctag / Tag.hh
public / analysis / contactMap.ccvector1.hh
public / cyclic_peptide / count_cycpep_sequences.ccexcn / Exceptions.hh
public / cyclic_peptide / count_cycpep_sequences.ccoptions / OptionCollection.hh
public / design / create_clash-based_repack_shell.ccexcn / Exceptions.hh
public / design / create_clash-based_repack_shell.ccvector1.hh
public / rna / util / cs_rosetta_rna.ccexcn / Exceptions.hh
public / rna / util / cs_rosetta_rna.ccfile / file_sys_util.hh
public / rna / util / cs_rosetta_rna.ccvector1.hh
public / analysis / cst_info.ccexcn / Exceptions.hh
public / analysis / cst_info.ccoptions / OptionCollection.hh
public / analysis / cst_info.ccstring_util.hh
public / enzdes / CstfileToTheozymePDB.ccexcn / Exceptions.hh
public / darc / DARC.ccfile / file_sys_util.hh
public / darc / DARC.ccnumbers.hh
benchmark / performance / DatabaseIO.bench.hhsql_database / DatabaseSessionManager.hh
benchmark / performance / DatabaseIO.bench.hhsql_database / types.hh
benchmark / performance / DatabaseIO.bench.hhvector1.hh
benchmark / scientific / ddg_benchmark.ccexcn / Exceptions.hh
benchmark / scientific / ddg_benchmark.ccfile / FileName.hh
benchmark / scientific / ddg_benchmark.ccvector0.hh
benchmark / scientific / ddg_benchmark.ccvector1.hh
public / ddg / ddg_monomer.ccexcn / Exceptions.hh
public / ddg / ddg_monomer.ccvector0.hh
public / ddg / ddg_monomer.ccvector1.hh
public / electron_density / denovo_density.ccfile / file_sys_util.hh
public / electron_density / denovo_density.ccfile / FileName.hh
public / electron_density / denovo_density.ccio / izstream.hh
public / electron_density / denovo_density.ccio / ozstream.hh
public / electron_density / denovo_density.ccstring_util.hh
public / electron_density / density_tools.ccvector1.hh
benchmark / performance / Design.bench.hhvector0.hh
benchmark / performance / Design.bench.hhvector1.hh
benchmark / scientific / design_contrast_and_statistic.ccexcn / Exceptions.hh
benchmark / scientific / design_contrast_and_statistic.ccfile / FileName.hh
benchmark / scientific / design_contrast_and_statistic.ccvector0.hh
benchmark / scientific / design_contrast_and_statistic.ccvector1.hh
public / post-translational_modification / DNA_methylation.ccexcn / Exceptions.hh
public / post-translational_modification / DNA_methylation.ccpointer / owning_ptr.hh
public / carbohydrates / dock_glycans.ccexcn / Exceptions.hh
public / carbohydrates / dock_glycans.ccpointer / owning_ptr.hh
public / carbohydrates / dock_glycans.ccvector1.hh
benchmark / performance / Docking.bench.hhvector1.hh
public / docking / docking_prepack_protocol.ccexcn / Exceptions.hh
public / docking / docking_prepack_protocol.ccvector1.hh
public / docking / docking_protocol.ccexcn / Exceptions.hh
public / docking / docking_protocol.ccvector1.hh
public / scenarios / doug_dock_design_min_mod2_cal_cal.ccexcn / Exceptions.hh
public / scenarios / doug_dock_design_min_mod2_cal_cal.ccexit.hh
public / scenarios / doug_dock_design_min_mod2_cal_cal.ccpointer / owning_ptr.hh
public / scenarios / doug_dock_design_min_mod2_cal_cal.ccvector0.hh
public / scenarios / doug_dock_design_min_mod2_cal_cal.ccvector1.hh
public / DRRAFTER / drrafter_error_estimation.ccexcn / Exceptions.hh
public / DRRAFTER / drrafter_error_estimation.ccvector1.hh
public / dump_capped_residue.ccexit.hh
public / dump_capped_residue.cctools / make_vector1.hh
public / dump_capped_residue.ccpointer / owning_ptr.hh
public / sewing / edge_file_generator.ccexcn / Exceptions.hh
public / sewing / edge_file_generator.ccoptions / OptionCollection.hh
public / clustering / energy_based_clustering.ccexcn / Exceptions.hh
public / analysis / ensemble_analysis.ccexcn / Exceptions.hh
public / analysis / ensemble_analysis.ccexit.hh
public / analysis / ensemble_analysis.ccio / ozstream.hh
public / analysis / ensemble_analysis.ccvector1.hh
public / ddg / ensemble_generator_score12_sidechain_ver2.ccexcn / Exceptions.hh
public / ddg / ensemble_generator_score12_sidechain_ver2.ccfile / FileName.hh
public / ddg / ensemble_generator_score12_sidechain_ver2.ccio / izstream.hh
public / ddg / ensemble_generator_score12_sidechain_ver2.ccio / ozstream.hh
public / ddg / ensemble_generator_score12_sidechain_ver2.ccvector1.hh
public / enzdes / enzyme_design.ccexcn / Exceptions.hh
public / enzdes / enzyme_design.ccfile / file_sys_util.hh
public / enzdes / enzyme_design.ccstring_util.hh
public / enzdes / enzyme_design.ccvector1.hh
public / rna / erraser / erraser2.ccexcn / Exceptions.hh
public / rna / erraser / erraser2.ccfile / file_sys_util.hh
public / rna / erraser / erraser2.ccio / izstream.hh
public / rna / erraser / erraser2.ccvector1.functions.hh
public / rna / erraser / erraser2.ccvector1.hh
public / rna / erraser / erraser_minimizer.ccexcn / Exceptions.hh
public / rna / erraser / erraser_minimizer.ccio / izstream.hh
public / rna / erraser / erraser_minimizer.ccpointer / owning_ptr.hh
public / rna / erraser / erraser_minimizer.ccio / ozstream.hh
public / rna / erraser / erraser_minimizer.cctag / Tag.hh
public / rna / erraser / erraser_minimizer.ccvector1.hh
public / scenarios / beta_strand_homodimer_design / exposed_strand_finder.ccexcn / Exceptions.hh
public / scenarios / beta_strand_homodimer_design / exposed_strand_finder.ccexit.hh
public / scenarios / beta_strand_homodimer_design / exposed_strand_finder.ccvector0.hh
public / scenarios / beta_strand_homodimer_design / exposed_strand_finder.ccvector1.functions.hh
public / scenarios / beta_strand_homodimer_design / exposed_strand_finder.ccvector1.hh
public / ligand_docking / extract_atomtree_diffs.ccexcn / Exceptions.hh
public / ligand_docking / extract_atomtree_diffs.ccexit.hh
public / ligand_docking / extract_atomtree_diffs.ccpointer / owning_ptr.hh
public / ligand_docking / extract_atomtree_diffs.ccvector1.hh
public / motif_tools / extract_motifs.ccexcn / Exceptions.hh
public / extract_pdbs.ccexcn / Exceptions.hh
public / extract_pdbs.ccio / izstream.hh
public / extract_pdbs.ccvector1.hh
public / analysis / fast_clustering.ccexcn / Exceptions.hh
public / analysis / fast_clustering.ccexit.hh
public / analysis / fast_clustering.ccfile / FileName.hh
public / analysis / fast_clustering.ccio / ozstream.hh
public / analysis / fast_clustering.ccvector1.hh
public / comparative_modeling / fast_gap.ccexcn / Exceptions.hh
public / comparative_modeling / fast_gap.ccio / ozstream.hh
public / comparative_modeling / fast_gap.ccvector0.hh
public / comparative_modeling / fast_gap.ccvector1.hh
benchmark / performance / FastRelax.bench.hhexcn / Exceptions.hh
benchmark / performance / FastRelax.bench.hhvector1.hh
public / fiber_diffraction / FiberDiffractionFreeSet.ccio / izstream.hh
public / fiber_diffraction / FiberDiffractionFreeSet.ccio / ozstream.hh
public / fiber_diffraction / FiberDiffractionFreeSet.ccsys_util.hh
public / DRRAFTER / fit_helix_in_map.ccexcn / Exceptions.hh
public / DRRAFTER / fit_helix_in_map.ccvector1.hh
public / comparative_modeling / fix_alignment_to_match_pdb.ccexcn / Exceptions.hh
public / comparative_modeling / fix_alignment_to_match_pdb.ccexit.hh
public / comparative_modeling / fix_alignment_to_match_pdb.ccfile / file_sys_util.hh
public / comparative_modeling / fix_alignment_to_match_pdb.ccfile / FileName.hh
public / comparative_modeling / fix_alignment_to_match_pdb.ccio / ozstream.hh
public / comparative_modeling / fix_alignment_to_match_pdb.ccstring_util.hh
public / comparative_modeling / fix_alignment_to_match_pdb.ccvector1.hh
public / design / fixbb.ccexcn / Exceptions.hh
public / design / fixbb.ccvector0.hh
public / design / fixbb.ccvector1.hh
public / flexpep_docking / FlexPepDocking.ccexcn / Exceptions.hh
public / flexpep_docking / FlexPepDocking.ccvector0.hh
public / flexpep_docking / FlexPepDocking.ccvector1.hh
public / scenarios / FloppyTail.ccexcn / Exceptions.hh
public / fragment_picker.ccexcn / Exceptions.hh
public / fragment_picker.ccvector1.hh
public / comparative_modeling / full_length_model.ccexcn / Exceptions.hh
public / comparative_modeling / full_length_model.ccio / ozstream.hh
public / comparative_modeling / full_length_model.ccvector1.hh
public / match / gen_apo_grids.ccexcn / Exceptions.hh
public / match / gen_apo_grids.ccexit.hh
public / match / gen_apo_grids.ccfile / FileName.hh
public / match / gen_apo_grids.ccstring_util.hh
public / match / gen_apo_grids.ccvector1.hh
public / match / gen_lig_grids.ccexcn / Exceptions.hh
public / match / gen_lig_grids.ccexit.hh
public / match / gen_lig_grids.ccfile / FileName.hh
public / match / gen_lig_grids.ccvector1.hh
public / internal / generate_database_cache.ccexit.hh
public / sewing / ligand_sewing_tools / generate_starting_zinc_sites.ccexcn / Exceptions.hh
public / sewing / ligand_sewing_tools / generate_starting_zinc_sites.ccstring_util.hh
public / sewing / ligand_sewing_tools / generate_starting_zinc_sites.ccvector1.hh
public / sewing / ligand_sewing_tools / generate_starting_zinc_sites.ccVirtualBase.hh
public / carbohydrates / glycan_clash_check.ccexcn / Exceptions.hh
public / carbohydrates / glycan_clash_check.ccoptions / OptionCollection.hh
public / carbohydrates / glycan_clash_check.ccstring_util.hh
public / carbohydrates / glycan_clash_check.ccvector1.hh
public / carbohydrates / glycan_info.ccexcn / Exceptions.hh
public / carbohydrates / glycan_info.ccoptions / OptionCollection.hh
public / carbohydrates / glycan_info.ccstring_util.hh
public / post-translational_modification / glycosyltransfer.ccexcn / Exceptions.hh
public / post-translational_modification / glycosyltransfer.ccpointer / owning_ptr.hh
public / scenarios / chemically_conjugated_docking / Gp_extra_bodies.hhvector1.hh
public / scenarios / chemically_conjugated_docking / Gp_quantification_metrics.hhfixedsizearray1.hh
public / scenarios / chemically_conjugated_docking / Gp_quantification_metrics.hhFixedSizeLexicographicalIterator.hh
public / scenarios / chemically_conjugated_docking / Gp_quantification_metrics.hhFixedSizeLexicographicalIterator.tmpl.hh
public / electron_density / grower_prep.ccvector1.hh
public / noncanonical_backbones / hbs_design.ccexcn / Exceptions.hh
public / noncanonical_backbones / hbs_design.ccexit.hh
public / noncanonical_backbones / hbs_design.ccpointer / owning_ptr.hh
public / helical_bundle / helical_bundle_predict.ccexcn / Exceptions.hh
public / helical_bundle / helical_bundle_predict.ccpointer / memory.hh
public / helical_bundle / helical_bundle_predict.ccoptions / OptionCollection.hh
public / scenarios / beta_strand_homodimer_design / homodimer_design.ccexcn / Exceptions.hh
public / scenarios / beta_strand_homodimer_design / homodimer_design.ccvector0.hh
public / scenarios / beta_strand_homodimer_design / homodimer_design.ccvector1.hh
public / scenarios / beta_strand_homodimer_design / homodimer_maker.ccexcn / Exceptions.hh
public / scenarios / beta_strand_homodimer_design / homodimer_maker.ccfile / FileName.hh
public / scenarios / beta_strand_homodimer_design / homodimer_maker.ccvector0.hh
public / scenarios / beta_strand_homodimer_design / homodimer_maker.ccvector1.hh
public / hydrate / hydrate.ccexcn / Exceptions.hh
public / idealize_jd2.ccexcn / Exceptions.hh
public / idealize_jd2.ccvector0.hh
public / idealize_jd2.ccvector1.hh
public / antibody / identify_cdr_clusters.ccexcn / Exceptions.hh
public / antibody / identify_cdr_clusters.ccstring_util.hh
public / motif_tools / incorporate_motifs.ccexcn / Exceptions.hh
benchmark / performance / InteractionGraph.bench.hhexcn / Exceptions.hh
benchmark / performance / InteractionGraph.bench.hhgraph / Graph.hh
benchmark / performance / InteractionGraph.bench.hhvector1.hh
public / analysis / interface_energy.ccvector1.hh
public / analysis / InterfaceAnalyzer.ccvector1.hh
public / comparative_modeling / iterhybrid_selector.ccexcn / Exceptions.hh
public / comparative_modeling / iterhybrid_selector.ccio / ozstream.hh
public / comparative_modeling / iterhybrid_selector.ccvector1.hh
public / ligand_docking / ligand_dock.ccexcn / Exceptions.hh
public / ligand_docking / ligand_dock.ccvector1.hh
public / ligand_docking / ligand_rpkmin.ccexcn / Exceptions.hh
public / ligand_docking / ligand_rpkmin.ccvector0.hh
public / ligand_docking / ligand_rpkmin.ccvector1.hh
public / nmr / ligand_transform_with_pcs.ccexcn / Exceptions.hh
public / nmr / ligand_transform_with_pcs.ccgraph / Graph.hh
public / nmr / ligand_transform_with_pcs.ccstring_util.hh
public / nmr / ligand_transform_with_pcs.ccvector1.hh
benchmark / performance / LigandDock.bench.hhvector1.hh
benchmark / performance / LigandDockScript.bench.hhvector1.hh
public / loop_modeling / loopmodel.ccexcn / Exceptions.hh
public / loop_modeling / loopmodel.ccvector1.hh
public / pocket / make_exemplar.ccio / mpistream.hh
public / pocket / make_exemplar.ccio / ozstream.hh
public / pocket / make_exemplar.ccvector1.hh
public / motif_dock / make_motif_tables.ccfile / file_sys_util.hh
public / motif_dock / make_motif_tables.ccfixedsizearray1.hh
public / motif_dock / make_motif_tables.ccio / izstream.hh
public / motif_dock / make_motif_tables.ccio / ozstream.hh
public / darc / make_ray_files.ccio / ozstream.hh
public / darc / make_ray_files.ccoptions / StringOption.hh
public / darc / make_ray_files.ccvector1.hh
public / ncaa_utilities / MakeRotLib.ccexcn / Exceptions.hh
public / ncaa_utilities / MakeRotLib.ccpointer / memory.hh
public / match / match.ccexcn / Exceptions.hh
public / match / match.ccstring_util.hh
public / match / match.ccvector1.hh
public / membrane_abinitio / membrane_abinitio2.ccexcn / Exceptions.hh
public / membrane_abinitio / membrane_abinitio2.ccvector1.hh
public / sewing / ligand_sewing_tools / metal_site_finder.ccexcn / Exceptions.hh
public / sewing / ligand_sewing_tools / metal_site_finder.ccvector1.functions.hh
public / sewing / ligand_sewing_tools / metal_site_finder.ccvector1.hh
public / magnesium / mg_modeler.cctools / make_vector1.hh
public / magnesium / mg_modeler.ccvector1.hh
public / minimize.ccexcn / Exceptions.hh
public / minimize.ccvector0.hh
public / minimize.ccvector1.hh
public / minimize_ppi.ccexcn / Exceptions.hh
public / minimize_ppi.ccio / ozstream.hh
public / minimize_ppi.ccvector1.hh
public / ddg / minimize_with_cst.ccexcn / Exceptions.hh
public / ddg / minimize_with_cst.ccfile / file_sys_util.hh
public / ddg / minimize_with_cst.ccfile / FileName.hh
public / ddg / minimize_with_cst.ccio / izstream.hh
public / ddg / minimize_with_cst.ccvector0.hh
public / ddg / minimize_with_cst.ccvector1.hh
benchmark / performance / Minimizer.bench.hhvector1.hh
public / boinc / minirosetta.ccexcn / Exceptions.hh
public / boinc / minirosetta.ccexit.hh
public / boinc / minirosetta.ccvector0.hh
public / boinc / minirosetta.ccvector1.hh
public / membrane / mp_dock.ccexcn / Exceptions.hh
public / membrane / mp_domain_assembly.ccexcn / Exceptions.hh
public / membrane / mp_domain_assembly.ccminmax.hh
public / membrane / mp_domain_assembly.ccio / ozstream.hh
public / membrane / mp_domain_assembly.ccstring_util.hh
public / membrane / mp_lipid_acc.ccexcn / Exceptions.hh
public / membrane / mp_lipid_acc.ccpointer / owning_ptr.hh
public / membrane / mp_mutate_relax.ccexcn / Exceptions.hh
public / membrane / mp_range_relax.ccexcn / Exceptions.hh
public / membrane / mp_seqrecov.ccexcn / Exceptions.hh
public / membrane / mp_seqrecov.ccfile / file_sys_util.hh
public / membrane / mp_seqrecov.ccio / ozstream.hh
public / membrane / mp_seqrecov.ccstring_util.hh
public / membrane / mp_seqrecov.ccgraph / UpperEdgeGraph.hh
public / membrane / mp_seqrecov.ccvector0.hh
public / membrane / mp_seqrecov.ccvector1.hh
public / membrane / mp_span_from_pdb.ccexcn / Exceptions.hh
public / membrane / mp_span_from_pdb.ccio / ozstream.hh
public / membrane / mp_span_from_pdb.ccstring_util.hh
public / membrane / mp_symdock.ccexcn / Exceptions.hh
public / membrane / mp_symdock.ccpointer / owning_ptr.hh
public / membrane / mp_transform.ccexcn / Exceptions.hh
public / membrane / mp_transform.ccfile / file_sys_util.hh
public / membrane / mp_transform.ccio / ozstream.hh
public / membrane / mp_transform.ccstring_util.hh
public / membrane / mp_viewer.ccexcn / Exceptions.hh
public / membrane / mp_viewer.ccpointer / owning_ptr.hh
public / membrane / mp_viewer.ccvector1.hh
public / design / mpi_msd.ccexcn / Exceptions.hh
public / design / mpi_msd.ccio / izstream.hh
public / design / mpi_msd.ccmpi_util.hh
public / design / mpi_msd.ccio / ozstream.hh
public / design / mpi_msd.ccstring_util.hh
public / design / mpi_msd.ccvector0.hh
public / design / mpi_msd.ccvector1.hh
public / rosetta_scripts / multistage / multistage_rosetta_scripts.ccexcn / Exceptions.hh
public / rosetta_scripts / multistage / multistage_rosetta_scripts.ccexit.hh
public / rosetta_scripts / multistage / multistage_rosetta_scripts.cctag / Tag.hh
public / mutate.ccexcn / Exceptions.hh
public / mutate.ccfile / file_sys_util.hh
public / mutate.ccio / ozstream.hh
public / mutate.ccstring_util.hh
public / mutate.ccio / util.hh
public / post-translational_modification / N-terminal_acetylation.ccexcn / Exceptions.hh
public / post-translational_modification / N-terminal_acetylation.ccpointer / owning_ptr.hh
public / rna / util / nucleobase_sample_around.ccexcn / Exceptions.hh
public / rna / util / nucleobase_sample_around.ccio / izstream.hh
public / rna / util / nucleobase_sample_around.ccio / ozstream.hh
public / rna / util / nucleobase_sample_around.ccsys_util.hh
public / rna / util / nucleobase_sample_around.ccvector1.hh
public / noncanonical_backbones / oop_design.ccexcn / Exceptions.hh
public / noncanonical_backbones / oop_design.ccexit.hh
public / noncanonical_backbones / oop_design.ccpointer / owning_ptr.hh
public / weight_optimization / optE_parallel.ccexcn / Exceptions.hh
benchmark / performance / OptionCollection.bench.hhkeys / KeyLookup.hh
public / antibody / packing_angle.ccexcn / Exceptions.hh
public / antibody / packing_angle.ccexit.hh
public / antibody / packing_angle.ccvector1.hh
public / packstat.ccexcn / Exceptions.hh
public / packstat.ccfile / FileName.hh
public / packstat.ccio / izstream.hh
public / packstat.ccio / ozstream.hh
public / packstat.ccvector1.hh
public / rosetta_scripts / parse_rosetta_script.ccexcn / Exceptions.hh
public / rosetta_scripts / parse_rosetta_script.ccvector1.hh
public / comparative_modeling / partial_thread.ccexcn / Exceptions.hh
public / comparative_modeling / partial_thread.ccexit.hh
public / comparative_modeling / partial_thread.ccfile / file_sys_util.hh
public / comparative_modeling / partial_thread.ccfile / FileName.hh
public / comparative_modeling / partial_thread.ccio / ozstream.hh
public / comparative_modeling / partial_thread.ccstring_util.hh
public / comparative_modeling / partial_thread.ccvector1.hh
benchmark / performance / pdb_io.bench.hhvector1.hh
public / pepspec / pepspec.ccexcn / Exceptions.hh
public / pepspec / pepspec.ccfile / file_sys_util.hh
public / pepspec / pepspec.ccvector1.hh
public / pepspec / pepspec_anchor_dock.ccexcn / Exceptions.hh
public / pepspec / pepspec_anchor_dock.ccfile / FileName.hh
public / pepspec / pepspec_anchor_dock.ccvector0.hh
public / pepspec / pepspec_anchor_dock.ccvector1.hh
public / noncanonical_backbones / peptoid_design.ccexit.hh
public / noncanonical_backbones / peptoid_design.ccpointer / owning_ptr.hh
public / analysis / per_residue_energies.ccvector1.hh
public / analysis / per_residue_solvent_exposure.ccexcn / Exceptions.hh
public / analysis / per_residue_solvent_exposure.ccfile / FileName.hh
public / analysis / per_residue_solvent_exposure.ccio / izstream.hh
public / analysis / per_residue_solvent_exposure.ccvector1.hh
benchmark / performance / performance_benchmark.ccexcn / Exceptions.hh
benchmark / performance / performance_benchmark.ccexit.hh
benchmark / performance / performance_benchmark.ccfile / file_sys_util.hh
benchmark / performance / performance_benchmark.ccvector0.hh
benchmark / performance / performance_benchmark.ccvector1.hh
public / pH_protocol.ccio / ozstream.hh
public / pH_protocol.ccstring_util.hh
public / pH_protocol.ccvector0.hh
public / pH_protocol.ccvector1.hh
public / post-translational_modification / phosphorylation.ccexcn / Exceptions.hh
public / post-translational_modification / phosphorylation.ccpointer / owning_ptr.hh
public / design / pmut_scan_parallel.ccexcn / Exceptions.hh
public / design / pmut_scan_parallel.ccfile / file_sys_util.hh
public / design / pmut_scan_parallel.ccvector1.hh
public / pocket / pocket_measure.ccexcn / Exceptions.hh
public / pocket / pocket_measure.ccio / ozstream.hh
public / pocket / pocket_measure.ccvector1.hh
public / pocket / pocket_relax.ccexcn / Exceptions.hh
public / pocket / pocket_relax.ccvector0.hh
public / pocket / pocket_relax.ccvector1.hh
public / pocket / pocket_suggest_target_residues_by_ddg.ccexcn / Exceptions.hh
public / pocket / pocket_suggest_target_residues_by_ddg.ccio / ozstream.hh
public / pocket / pocket_suggest_target_residues_by_ddg.ccstring_util.hh
public / pocket / pocket_suggest_target_residues_by_ddg.ccvector1.hh
public / nmr / r_noe_assign.ccexcn / Exceptions.hh
public / nmr / r_noe_assign.ccvector1.hh
public / recces / recces.ccexcn / Exceptions.hh
public / recces / legacy / recces_turner.ccexcn / Exceptions.hh
public / recon_design / recon.ccexcn / Exceptions.hh
public / recon_design / recon.ccvector1.hh
public / recon_design / recon.cctag / XMLSchemaGeneration.hh
public / relax.ccexcn / Exceptions.hh
public / relax.ccvector1.hh
public / remodel.ccexcn / Exceptions.hh
public / remodel.ccfile / FileName.hh
public / remodel.ccio / izstream.hh
public / remodel.ccoptions / keys / OptionKey.hh
public / analysis / report_hbonds_for_plugin.ccoptions / keys / BooleanOptionKey.hh
public / analysis / report_hbonds_for_plugin.ccfile / FileName.hh
public / analysis / report_hbonds_for_plugin.ccio / izstream.hh
public / analysis / report_hbonds_for_plugin.ccoptions / keys / StringOptionKey.hh
public / analysis / report_hbonds_for_plugin.ccvector1.hh
public / stepwise / resample_full_model.ccexcn / Exceptions.hh
public / stepwise / resample_full_model.ccvector1.hh
public / analysis / residue_energy_breakdown.ccvector1.hh
public / analysis / ResidueDisorder.ccio / izstream.hh
public / analysis / ResidueDisorder.ccio / ozstream.hh
benchmark / performance / ResidueType.bench.hhvector1.hh
public / restype_converter.ccexcn / Exceptions.hh
public / restype_converter.ccoptions / OptionCollection.hh
public / rosetta_scripts / multistage / reverse_conversion_util.hhtag / Tag.hh
public / rosetta_scripts / revert_design_to_native.ccexcn / Exceptions.hh
public / rosetta_scripts / revert_design_to_native.ccvector0.hh
public / rosetta_scripts / revert_design_to_native.ccvector1.hh
public / rna / util / rna_cluster.ccexcn / Exceptions.hh
public / rna / util / rna_cluster.ccvector1.hh
public / rna / util / rna_database.ccexcn / Exceptions.hh
public / rna / util / rna_database.ccfile / file_sys_util.hh
public / rna / util / rna_database.cctools / make_vector1.hh
public / rna / util / rna_database.ccio / ozstream.hh
public / rna / util / rna_database.ccvector1.hh
public / rna / rna_denovo.ccexcn / Exceptions.hh
public / rna / rna_denovo.ccfile / file_sys_util.hh
public / rna / rna_denovo.ccjson_utilities.hh
public / rna / rna_denovo.ccoptions / keys / OptionKeyList.hh
public / rna / rna_denovo.ccvector1.hh
public / rna / rna_design.ccexcn / Exceptions.hh
public / rna / rna_design.ccio / ozstream.hh
public / rna / rna_design.ccvector0.hh
public / rna / rna_design.ccvector1.hh
public / rna / util / rna_extract.ccexcn / Exceptions.hh
public / rna / util / rna_extract.ccvector1.hh
public / rna / util / rna_features.ccfile / FileName.hh
public / rna / util / rna_features.ccio / izstream.hh
public / rna / util / rna_features.cctools / make_vector1.hh
public / rna / util / rna_features.ccio / ozstream.hh
public / rna / util / rna_features.ccvector1.hh
public / rna / util / rna_graft.ccvector1.hh
public / rna / util / rna_helix.ccexcn / Exceptions.hh
public / rna / util / rna_helix.ccexit.hh
public / rna / util / rna_helix.ccvector1.hh
public / rna / util / rna_idealize.ccexcn / Exceptions.hh
public / rna / util / rna_minimize.ccexcn / Exceptions.hh
public / rna / util / rna_minimize.ccfile / file_sys_util.hh
public / rna / util / rna_minimize.ccvector1.hh
public / rna / util / rna_motif.ccio / ozstream.hh
public / rna / util / rna_predict_chem_map.ccfile / FileName.hh
public / rna / util / rna_predict_chem_map.ccio / izstream.hh
public / rna / util / rna_predict_chem_map.cctools / make_vector1.hh
public / rna / util / rna_predict_chem_map.ccio / ozstream.hh
public / rna / util / rna_predict_chem_map.ccvector1.hh
public / rna / util / rna_score.ccexcn / Exceptions.hh
public / rna / util / rna_score.ccvector1.hh
public / rna / util / rna_suitename.ccexcn / Exceptions.hh
public / rna / util / rna_suitename.ccvector1.hh
public / rna / thread / rna_thread.ccexcn / Exceptions.hh
public / rna / thread / rna_thread.ccio / izstream.hh
public / rna / thread / rna_thread.ccio / ozstream.hh
public / rna / thread / rna_thread.ccstring_util.hh
public / rna / thread / rna_thread.ccvector1.hh
public / rna / thread / rna_thread_and_minimize.ccexcn / Exceptions.hh
public / rna / thread / rna_thread_and_minimize.ccio / ozstream.hh
public / rna / thread / rna_thread_and_minimize.ccstring_util.hh
public / rna / thread / rna_thread_and_minimize.ccvector1.hh
public / rnp_ddg / rnp_ddg.ccpointer / owning_ptr.hh
public / rosetta_scripts / rosetta_scripts.ccexcn / Exceptions.hh
public / rosetta_scripts / rosetta_scripts.ccvector1.hh
public / rosetta_scripts / rosetta_scripts.cctag / XMLSchemaGeneration.hh
public / rosettaDNA / rosettaDNA.ccexcn / Exceptions.hh
public / rosettaDNA / rosettaDNA.ccvector1.hh
benchmark / scientific / rotamer_recovery.ccexcn / Exceptions.hh
benchmark / scientific / rotamer_recovery.ccexit.hh
benchmark / scientific / rotamer_recovery.ccvector0.hh
benchmark / scientific / rotamer_recovery.ccvector1.hh
public / analysis / sc.ccexcn / Exceptions.hh
public / analysis / sc.ccvector1.hh
benchmark / performance / score.bench.hhvector1.hh
public / analysis / score.ccexcn / Exceptions.hh
public / analysis / score.ccexit.hh
public / comparative_modeling / score_aln.ccexcn / Exceptions.hh
public / comparative_modeling / score_aln.ccexit.hh
public / comparative_modeling / score_aln.ccfile / file_sys_util.hh
public / comparative_modeling / score_aln.ccfile / FileName.hh
public / comparative_modeling / score_aln.ccio / ozstream.hh
public / comparative_modeling / score_aln.ccstring_util.hh
public / comparative_modeling / score_aln.ccvector1.hh
public / comparative_modeling / score_aln2.ccexcn / Exceptions.hh
public / comparative_modeling / score_aln2.ccexit.hh
public / comparative_modeling / score_aln2.ccfile / file_sys_util.hh
public / comparative_modeling / score_aln2.ccfile / FileName.hh
public / comparative_modeling / score_aln2.ccio / ozstream.hh
public / comparative_modeling / score_aln2.ccstring_util.hh
public / comparative_modeling / score_aln2.ccvector1.hh
public / analysis / score_jd2.ccexcn / Exceptions.hh
public / analysis / score_jd2.ccexit.hh
public / analysis / score_jd2.ccvector0.hh
public / analysis / score_jd2.ccvector1.hh
benchmark / performance / ScoreEach.bench.hhexcn / Exceptions.hh
benchmark / performance / ScoreEach.bench.hhvector1.hh
public / sewing / segment_file_generator.ccexit.hh
public / sewing / segment_file_generator.ccio / izstream.hh
public / sewing / segment_file_generator.ccio / ozstream.hh
public / sewing / segment_file_generator.ccstring_util.hh
public / sewing / segment_file_generator.fwd.hhpointer / owning_ptr.hh
public / sewing / segment_file_generator.hhpointer / owning_ptr.hh
public / sewing / segment_file_generator.hhvector1.hh
public / sewing / segment_file_generator.hhVirtualBase.hh
public / ligand_docking / select_best_unique_ligand_poses.ccexcn / Exceptions.hh
public / ligand_docking / select_best_unique_ligand_poses.ccexit.hh
public / ligand_docking / select_best_unique_ligand_poses.ccio / ozstream.hh
public / ligand_docking / select_best_unique_ligand_poses.ccvector1.hh
public / design / sequence_recovery.ccexcn / Exceptions.hh
public / design / sequence_recovery.ccfile / file_sys_util.hh
public / design / sequence_recovery.ccio / ozstream.hh
public / design / sequence_recovery.ccgraph / UpperEdgeGraph.hh
public / design / sequence_recovery.ccvector0.hh
public / design / sequence_recovery.ccvector1.hh
public / sequence_tolerance.ccexcn / Exceptions.hh
public / sequence_tolerance.ccfile / FileName.hh
public / sequence_tolerance.ccvector0.hh
public / sequence_tolerance.ccvector1.hh
public / legacy_sewing / sewing_hasher.ccsql_database / DatabaseSessionManager.hh
public / legacy_sewing / sewing_hasher.ccfile / FileName.hh
public / legacy_sewing / sewing_hasher.ccio / izstream.hh
public / legacy_sewing / sewing_hasher.ccmpi_util.hh
public / legacy_sewing / sewing_hasher.ccstring_util.hh
public / legacy_sewing / sewing_hasher.ccvector1.hh
benchmark / performance / ShearMover.bench.hhvector1.hh
public / cyclic_peptide / simple_cycpep_predict.ccexcn / Exceptions.hh
public / cyclic_peptide / simple_cycpep_predict.ccexit.hh
public / cyclic_peptide / simple_cycpep_predict.ccio / izstream.hh
public / cyclic_peptide / simple_cycpep_predict.ccio / ozstream.hh
public / cyclic_peptide / simple_cycpep_predict.ccvector1.hh
benchmark / performance / SmallMover.bench.hhvector1.hh
public / antibody / snugdock.ccexcn / Exceptions.hh
public / comparative_modeling / spheregrinder.ccexcn / Exceptions.hh
public / stepwise / stepwise.ccfile / FileName.hh
public / stepwise / stepwise.ccjson_utilities.hh
public / stepwise / stepwise.ccvector1.hh
public / struc_set_fragment_picker.ccexit.hh
public / struc_set_fragment_picker.ccfile / FileName.hh
public / struc_set_fragment_picker.ccio / izstream.hh
public / struc_set_fragment_picker.ccio / ozstream.hh
public / struc_set_fragment_picker.ccvector1.hh
public / comparative_modeling / super_aln.ccexcn / Exceptions.hh
public / comparative_modeling / super_aln.ccvector1.hh
public / design / supercharge.ccexcn / Exceptions.hh
public / design / supercharge.ccexit.hh
public / design / supercharge.ccfile / FileName.hh
public / design / supercharge.ccio / ozstream.hh
public / design / supercharge.ccsort_predicates.hh
public / design / supercharge.ccvector0.hh
public / design / supercharge.ccvector1.hh
public / surface_docking / surface_docking.ccexcn / Exceptions.hh
public / stepwise / legacy / swa_protein_main.ccvector1.hh
public / stepwise / legacy / swa_rna_main.ccexcn / Exceptions.hh
public / stepwise / legacy / swa_rna_main.ccfile / file_sys_util.hh
public / stepwise / legacy / swa_rna_main.ccio / izstream.hh
public / stepwise / legacy / swa_rna_main.ccio / ozstream.hh
public / stepwise / legacy / swa_rna_main.ccvector1.hh
public / stepwise / legacy / swa_rna_util.ccexcn / Exceptions.hh
public / stepwise / legacy / swa_rna_util.ccfile / file_sys_util.hh
public / stepwise / legacy / swa_rna_util.ccio / izstream.hh
public / stepwise / legacy / swa_rna_util.ccio / ozstream.hh
public / stepwise / legacy / swa_rna_util.ccvector1.hh
public / SymDock.ccexcn / Exceptions.hh
public / comparative_modeling / template_features.ccexcn / Exceptions.hh
public / comparative_modeling / template_features.ccvector1.hh
tests / test_C-terminal_conjugation.ccexcn / Exceptions.hh
tests / test_carbohydrate_docking.ccexcn / Exceptions.hh
tests / test_carbohydrate_scoring.ccexcn / Exceptions.hh
tests / test_CarbohydrateInfo.ccexcn / Exceptions.hh
tests / test_CarbohydrateInfo.ccfile / FileName.hh
tests / test_CarbohydrateInfo.ccpointer / owning_ptr.hh
tests / test_CarbohydrateInfo.ccvector1.hh
tests / test_CCD_loop_closure.ccexcn / Exceptions.hh
tests / test_CCD_loop_closure.ccstring_util.hh
tests / test_coenzymes.ccexcn / Exceptions.hh
tests / test_coenzymes.ccfile / FileName.hh
tests / test_EnergyMethodOptions.ccexcn / Exceptions.hh
tests / test_explicit_membrane_input.ccexcn / Exceptions.hh
tests / test_non-canonical_connectivities.ccexcn / Exceptions.hh
tests / test_RingConformationMover.ccexcn / Exceptions.hh
tests / test_SiteConstraint.ccexcn / Exceptions.hh
public / darc / theta_ligand.ccio / ozstream.hh
public / darc / theta_ligand.ccvector1.hh
public / weight_optimization / torsional_potential_corrections.ccexcn / Exceptions.hh
public / weight_optimization / torsional_potential_corrections.ccfile / file_sys_util.hh
public / weight_optimization / torsional_potential_corrections.ccfile / FileName.hh
public / weight_optimization / torsional_potential_corrections.ccio / izstream.hh
public / weight_optimization / torsional_potential_corrections.ccio / mpistream.hh
public / weight_optimization / torsional_potential_corrections.ccio / ozstream.hh
public / weight_optimization / torsional_potential_corrections.ccstring_util.hh
public / weight_optimization / torsional_potential_corrections.ccvector1.hh
public / trRosetta / trRosetta.ccexcn / Exceptions.hh
public / trRosetta / trRosetta.ccoptions / OptionCollection.hh
public / scenarios / chemically_conjugated_docking / UBQ_E2_thioester.ccexcn / Exceptions.hh
public / scenarios / chemically_conjugated_docking / UBQ_E2_thioester.ccexit.hh
public / scenarios / chemically_conjugated_docking / UBQ_E2_thioester.ccvector0.hh
public / scenarios / chemically_conjugated_docking / UBQ_E2_thioester.ccvector1.hh
public / scenarios / chemically_conjugated_docking / UBQ_Gp_CYD-CYD.ccexcn / Exceptions.hh
public / scenarios / chemically_conjugated_docking / UBQ_Gp_CYD-CYD.ccexit.hh
public / scenarios / chemically_conjugated_docking / UBQ_Gp_CYD-CYD.ccvector0.hh
public / scenarios / chemically_conjugated_docking / UBQ_Gp_CYD-CYD.ccvector1.hh
public / scenarios / chemically_conjugated_docking / UBQ_Gp_LYX-Cterm.ccexcn / Exceptions.hh
public / scenarios / chemically_conjugated_docking / UBQ_Gp_LYX-Cterm.ccexit.hh
public / scenarios / chemically_conjugated_docking / UBQ_Gp_LYX-Cterm.ccSingletonBase.hh
public / ncaa_utilities / UnfoldedStateEnergyCalculator.ccexcn / Exceptions.hh
public / ncaa_utilities / UnfoldedStateEnergyCalculator.ccvector1.hh
public / internal / validate_database.ccexit.hh
public / rosetta_scripts / validate_rosetta_script.ccexcn / Exceptions.hh
public / rosetta_scripts / validate_rosetta_script.ccvector1.hh
public / comparative_modeling / validate_silent.ccexcn / Exceptions.hh
public / comparative_modeling / validate_silent.ccexit.hh
public / comparative_modeling / validate_silent.ccvector1.hh
public / vip.ccexcn / Exceptions.hh
public / vip.ccoptions / keys / OptionKey.hh
public / vip.ccstring_util.hh
benchmark / performance / xml_parsing.bench.hhtag / Tag.hh
benchmark / performance / xml_parsing.bench.hhvector1.hh
public / design / zinc1_homodimer_design.ccexit.hh
public / design / zinc1_homodimer_design.ccfile / FileName.hh
public / design / zinc1_homodimer_design.ccvector1.hh
public / design / zinc1_homodimer_setup.ccfile / FileName.hh
public / design / zinc1_homodimer_setup.ccvector1.hh
public / design / zinc2_homodimer_design.ccfile / FileName.hh
public / design / zinc2_homodimer_design.ccvector0.hh
public / design / zinc2_homodimer_design.ccvector1.hh
public / design / zinc2_homodimer_setup.ccexit.hh
public / design / zinc2_homodimer_setup.ccfile / FileName.hh
public / design / zinc2_homodimer_setup.ccvector0.hh
public / design / zinc2_homodimer_setup.ccvector1.hh
public / design / zinc_heterodimer_design.ccfile / FileName.hh
public / design / zinc_heterodimer_design.ccvector1.hh
public / sewing / ligand_sewing_tools / zinc_statistic_generator.ccexcn / Exceptions.hh
public / sewing / ligand_sewing_tools / zinc_statistic_generator.ccfile / file_sys_util.hh
public / sewing / ligand_sewing_tools / zinc_statistic_generator.ccfixedsizearray1.hh
public / sewing / ligand_sewing_tools / zinc_statistic_generator.ccio / ozstream.hh
public / sewing / ligand_sewing_tools / zinc_statistic_generator.ccstring_util.hh
public / sewing / ligand_sewing_tools / zinc_statistic_generator.ccvector1.hh
public / sewing / ligand_sewing_tools / zinc_statistic_generator.ccVirtualBase.hh
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