PerResidueDensityFitMetric.cc File Reference

A per-residue metric that will calculate the density fit for each residue using either a correlation or a zscore. More...

#include <core/simple_metrics/per_residue_metrics/PerResidueDensityFitMetric.hh>
#include <core/simple_metrics/simple_metric_creators.hh>
#include <core/simple_metrics/PerResidueRealMetric.hh>
#include <core/simple_metrics/util.hh>
#include <core/select/residue_selector/ResidueSelector.hh>
#include <core/select/residue_selector/util.hh>
#include <core/select/residue_selector/ResidueSelectorFactory.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/electron_density/ElectronDensity.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/scoring/EnergyGraph.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/ref_pose.hh>
#include <core/pose/util.hh>
#include <core/pose/symmetry/util.hh>
#include <core/conformation/symmetry/SymmetricConformation.hh>
#include <core/conformation/symmetry/SymmetryInfo.hh>
#include <core/scoring/symmetry/SymmetricScoreFunction.hh>
#include <core/scoring/electron_density/util.hh>
#include <basic/Tracer.hh>
#include <basic/datacache/DataMap.hh>
#include <utility/tag/Tag.hh>
#include <utility/string_util.hh>
#include <numeric/zscores.hh>
#include <utility/tag/XMLSchemaGeneration.hh>

Namespaces
	core
	A class for reading in the atom type properties.
	core::simple_metrics
	core::simple_metrics::per_residue_metrics

Functions
static basic::Tracer	TR ("core.simple_metrics.per_residue_metrics.PerResidueDensityFitMetric")

Detailed Description

A per-residue metric that will calculate the density fit for each residue using either a correlation or a zscore.

Author

Jared Adolf-Bryfogle (jadol.nosp@m.fbr@.nosp@m.gmail.nosp@m..com)

• Original Code zscore, matchres code, and Logic - Reference (eLife 2016, Dimaio)

  Author

  Ray Wang (wangy.nosp@m.r@uw.nosp@m..edu)

  Frank Dimaio (fdima.nosp@m.io@g.nosp@m.mail..nosp@m.com)

Function Documentation

static basic::Tracer TR ( "core.simple_metrics.per_residue_metrics.PerResidueDensityFitMetric"  )

static

Referenced by core::simple_metrics::per_residue_metrics::PerResidueDensityFitMetric::calculate().