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protocols::carbohydrates::GlycanTreeModeler Member List

This is the complete list of members for protocols::carbohydrates::GlycanTreeModeler, including all inherited members.

apply(core::pose::Pose &pose) overrideprotocols::carbohydrates::GlycanTreeModelervirtual
cartmin_protocols::carbohydrates::GlycanTreeModelerprivate
clear_info()protocols::moves::Moverinlinevirtual
clone() const overrideprotocols::carbohydrates::GlycanTreeModelervirtual
completed_quenches_protocols::carbohydrates::GlycanTreeModelerprivate
create()protocols::moves::Movervirtual
final_min_pack_min_protocols::carbohydrates::GlycanTreeModelerprivate
force_virts_for_refine_protocols::carbohydrates::GlycanTreeModelerprivate
fresh_instance() const overrideprotocols::carbohydrates::GlycanTreeModelervirtual
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const overrideprotocols::carbohydrates::GlycanTreeModelervirtual
get_native_pose() const protocols::moves::Mover
get_self_ptr() const protocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() const protocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_type() const protocols::moves::Moverinline
glycan_sampler_kt_protocols::carbohydrates::GlycanTreeModelerprivate
glycan_sampler_rounds_protocols::carbohydrates::GlycanTreeModelerprivate
GlycanTreeModeler()protocols::carbohydrates::GlycanTreeModeler
GlycanTreeModeler(GlycanTreeModeler const &src)protocols::carbohydrates::GlycanTreeModeler
hybrid_protocol_protocols::carbohydrates::GlycanTreeModelerprivate
idealize_protocols::carbohydrates::GlycanTreeModelerprivate
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
is_quenched() const protocols::carbohydrates::GlycanTreeModelerprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
layer_size_protocols::carbohydrates::GlycanTreeModelerprivate
match_window_one_protocols::carbohydrates::GlycanTreeModelerprivate
min_rings_protocols::carbohydrates::GlycanTreeModelerprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
mover_name()protocols::carbohydrates::GlycanTreeModelerstatic
name()protocols::moves::Moverinlinestatic
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) overrideprotocols::carbohydrates::GlycanTreeModelervirtual
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const overrideprotocols::carbohydrates::GlycanTreeModelervirtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)protocols::carbohydrates::GlycanTreeModelerstatic
quench_mode_protocols::carbohydrates::GlycanTreeModelerprivate
refine_protocols::carbohydrates::GlycanTreeModelerprivate
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
reset_status()protocols::moves::Mover
root_prob_sampling_protocols::carbohydrates::GlycanTreeModelerprivate
rounds_protocols::carbohydrates::GlycanTreeModelerprivate
scorefxn_protocols::carbohydrates::GlycanTreeModelerprivate
selector_protocols::carbohydrates::GlycanTreeModelerprivate
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_final_min_pack_min(bool const minpackmin)protocols::carbohydrates::GlycanTreeModeler
set_force_virts_for_refinement(bool force_virts)protocols::carbohydrates::GlycanTreeModeler
set_glycan_sampler_kt(core::Real kT)protocols::carbohydrates::GlycanTreeModeler
set_glycan_sampler_rounds(core::Size glycan_sampler_rounds)protocols::carbohydrates::GlycanTreeModeler
set_hybrid_protocol(bool hybrid_protocol)protocols::carbohydrates::GlycanTreeModeler
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_layer_size(core::Size const layer_size)protocols::carbohydrates::GlycanTreeModeler
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_protein_linkage_prob_sampling(bool root_probs)protocols::carbohydrates::GlycanTreeModeler
set_quench_mode(bool quench_mode)protocols::carbohydrates::GlycanTreeModeler
set_refine(bool const refine)protocols::carbohydrates::GlycanTreeModeler
set_rounds(core::Size const rounds)protocols::carbohydrates::GlycanTreeModeler
set_scorefxn(core::scoring::ScoreFunctionCOP scorefxn)protocols::carbohydrates::GlycanTreeModeler
set_selector(core::select::residue_selector::ResidueSelectorCOP selector)protocols::carbohydrates::GlycanTreeModeler
set_type(std::string const &setting)protocols::moves::Moverinline
set_use_conformer_probabilities(bool conformer_probs)protocols::carbohydrates::GlycanTreeModeler
set_use_gaussian_sampling(bool gaussian_sampling)protocols::carbohydrates::GlycanTreeModeler
set_use_shear(bool use_shear)protocols::carbohydrates::GlycanTreeModeler
set_window_size(core::Size const window_size)protocols::carbohydrates::GlycanTreeModeler
setup_cartmin(core::scoring::ScoreFunctionOP scorefxn) const protocols::carbohydrates::GlycanTreeModelerprivate
setup_score_function()protocols::carbohydrates::GlycanTreeModelerprivate
show(std::ostream &output=std::cout) const overrideprotocols::carbohydrates::GlycanTreeModelervirtual
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
trees_to_model_protocols::carbohydrates::GlycanTreeModelerprivate
type(const std::string &type_in)protocols::moves::Moverinline
type() const protocols::moves::Moverinline
use_conformer_populations_protocols::carbohydrates::GlycanTreeModelerprivate
use_gaussian_sampling_protocols::carbohydrates::GlycanTreeModelerprivate
use_shear_protocols::carbohydrates::GlycanTreeModelerprivate
window_size_protocols::carbohydrates::GlycanTreeModelerprivate
~GlycanTreeModeler() overrideprotocols::carbohydrates::GlycanTreeModeler
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