core::select::residue_selector::GlycanSequonsSelector Class Reference

Find glycosylation sequons in pose Glycosylation sites are typically recognized by enzymes by means of a recognition sequence, or 'motif'. This ResidueSelector selects all residues that can be glycosylated using one of a few sequence motifs that are pre-defined and can be selected. For selecting residues in other motifs, use the ResidueInSequenceMotifSelctor, which takes regular expressions as input. More...

#include <GlycanSequonsSelector.hh>

Inheritance diagram for core::select::residue_selector::GlycanSequonsSelector:

Public Types
typedef core::select::residue_selector::ResidueSelectorOP	ResidueSelectorOP
typedef core::select::residue_selector::ResidueSubset	ResidueSubset
Public Types inherited from core::select::residue_selector::ResidueInSequenceMotifSelector
typedef core::select::residue_selector::ResidueSelectorOP	ResidueSelectorOP
typedef core::select::residue_selector::ResidueSubset	ResidueSubset

Public Member Functions
	GlycanSequonsSelector ()
	Constructor. More...
ResidueSelectorOP	clone () const override
	Clone operator. More...
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	XML parse. More...
std::string	get_name () const override
	Get the mover class name. More...
Public Member Functions inherited from core::select::residue_selector::ResidueInSequenceMotifSelector
	ResidueInSequenceMotifSelector ()
	Constructor. More...
	ResidueInSequenceMotifSelector (std::string regex, core::Size position_in_motif)
	Constructor for derived classes. More...
	~ResidueInSequenceMotifSelector () override
	Destructor. More...
ResidueSelectorOP	clone () const override
	Clone operator. More...
ResidueSubset	apply (core::pose::Pose const &pose) const override
	"Apply" function. More...
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	XML parse. More...
std::string	get_name () const override
	Get the mover class name. More...
Public Member Functions inherited from core::select::residue_selector::ResidueSelector
	ResidueSelector ()
	Constructor. More...
	~ResidueSelector () override
	Destructor. More...
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()
	Get the mover class name. More...
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
	Provide XSD information, enabling mechanical validation of input XML. More...
Static Public Member Functions inherited from core::select::residue_selector::ResidueInSequenceMotifSelector
static std::string	class_name ()
	Get the mover class name. More...
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
	Provide XSD information, enabling mechanical validation of input XML. More...

Private Attributes
bool	NxST_ = true
bool	NxC_ = false
bool	WxxW_ = false
bool	WSTxC_ = false

Additional Inherited Members
Protected Attributes inherited from core::select::residue_selector::ResidueInSequenceMotifSelector
std::string	regex_
core::Size	position_in_motif_

Detailed Description

Find glycosylation sequons in pose Glycosylation sites are typically recognized by enzymes by means of a recognition sequence, or 'motif'. This ResidueSelector selects all residues that can be glycosylated using one of a few sequence motifs that are pre-defined and can be selected. For selecting residues in other motifs, use the ResidueInSequenceMotifSelctor, which takes regular expressions as input.

Member Typedef Documentation

typedef core::select::residue_selector::ResidueSelectorOP core::select::residue_selector::GlycanSequonsSelector::ResidueSelectorOP

typedef core::select::residue_selector::ResidueSubset core::select::residue_selector::GlycanSequonsSelector::ResidueSubset

Constructor & Destructor Documentation

core::select::residue_selector::GlycanSequonsSelector::GlycanSequonsSelector

(

)

Constructor.

Constructor. Select N-notP-S/T by default.

Member Function Documentation

std::string core::select::residue_selector::GlycanSequonsSelector::class_name ( )

static

Get the mover class name.

Referenced by get_name(), core::select::residue_selector::GlycanSequonsSelectorCreator::keyname(), and provide_xml_schema().

ResidueSelectorOP core::select::residue_selector::GlycanSequonsSelector::clone ( ) const

overridevirtual

Clone operator.

Clone function.

Copy the current object (creating the copy on the heap) and return an owning pointer to the copy. All ResidueSelectors must implement this.

Copy this object and return owning pointer to the copy (created on the heap).

Implements core::select::residue_selector::ResidueSelector.

std::string core::select::residue_selector::GlycanSequonsSelector::get_name ( ) const

overridevirtual

Get the mover class name.

Implements core::select::residue_selector::ResidueSelector.

References class_name().

void core::select::residue_selector::GlycanSequonsSelector::parse_my_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &    )

overridevirtual

XML parse.

Parse RosettaScripts tags and set up this mover.

Reimplemented from core::select::residue_selector::ResidueSelector.

References NxC_, NxST_, core::select::residue_selector::ResidueInSequenceMotifSelector::regex_, WSTxC_, and WxxW_.

void core::select::residue_selector::GlycanSequonsSelector::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

Provide XSD information, enabling mechanical validation of input XML.

References class_name(), and core::select::residue_selector::xsd_type_definition_w_attributes().

Referenced by core::select::residue_selector::GlycanSequonsSelectorCreator::provide_xml_schema().

Member Data Documentation

bool core::select::residue_selector::GlycanSequonsSelector::NxC_ = false

private

Referenced by parse_my_tag().

bool core::select::residue_selector::GlycanSequonsSelector::NxST_ = true

private

Referenced by parse_my_tag().

bool core::select::residue_selector::GlycanSequonsSelector::WSTxC_ = false

private

Referenced by parse_my_tag().

bool core::select::residue_selector::GlycanSequonsSelector::WxxW_ = false

private

Referenced by parse_my_tag().

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The documentation for this class was generated from the following files:

• src/core/select/residue_selector/GlycanSequonsSelector.hh
• src/core/select/residue_selector/GlycanSequonsSelector.cc