ERRASER2Protocol.cc File Reference

Run a single-threaded, checkpoint free, RosettaScripts accessible ERRASER2 job. More...

#include <protocols/rna/movers/ERRASER2Protocol.hh>
#include <protocols/rna/movers/ERRASER2ProtocolCreator.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <protocols/moves/mover_schemas.hh>
#include <protocols/viewer/viewers.hh>
#include <protocols/rna/movers/ErraserMinimizerMover.hh>
#include <protocols/stepwise/monte_carlo/util.hh>
#include <protocols/stepwise/monte_carlo/options/StepWiseMonteCarloOptions.hh>
#include <protocols/stepwise/monte_carlo/mover/StepWiseMasterMover.hh>
#include <protocols/stepwise/modeler/rna/util.hh>
#include <protocols/stepwise/modeler/util.hh>
#include <core/pose/rna/RNA_SuiteName.hh>
#include <core/select/residue_selector/ResidueSelector.hh>
#include <core/select/residue_selector/util.hh>
#include <core/pose/Pose.hh>
#include <core/chemical/ResidueType.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/Conformation.hh>
#include <core/chemical/AtomType.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/ScoreType.hh>
#include <core/pose/PDBInfo.hh>
#include <core/types.hh>
#include <basic/Tracer.hh>
#include <basic/datacache/DataMap.hh>
#include <utility/tag/Tag.hh>
#include <utility/pointer/memory.hh>
#include <utility/vector1.hh>
#include <utility/vector1.functions.hh>
#include <numeric/random/random.hh>
#include <numeric/random/random_permutation.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <utility/tag/XMLSchemaGeneration.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::rna
	protocols::rna::movers

Functions
static basic::Tracer	TR ("protocols.rna.movers.ERRASER2Protocol")
static basic::Tracer	protocols::rna::movers::TR ("apps.public.rna.erraser.erraser2")
utility::vector1< core::Size >	protocols::rna::movers::all_pose_residues (core::pose::Pose const &pose)
void	protocols::rna::movers::show_accuracy_report (pose::Pose const &start_pose, std::string const &tag, core::Size const round)
bool	protocols::rna::movers::atoms_have_bond_to_bonded_atoms (pose::Pose const &pose, core::Size const ai, core::Size const ii, core::Size const aj, core::Size const jj)
bool	protocols::rna::movers::atoms_have_mutual_bond_to_atom (pose::Pose const &pose, core::Size const ai, core::Size const ii, core::Size const aj, core::Size const jj)
bool	protocols::rna::movers::bump_check (pose::Pose const &pose, core::Size const ii)
utility::vector1< core::Size >	protocols::rna::movers::determine_residues_to_rebuild (utility::vector1< core::Size > const &consider_rebuild_res, pose::Pose const &start_pose)
std::ostream &	protocols::rna::movers::operator<< (std::ostream &os, ERRASER2Protocol const &mover)
	private methods /// More...

Detailed Description

Run a single-threaded, checkpoint free, RosettaScripts accessible ERRASER2 job.

Author

Andy Watkins (andy..nosp@m.watk.nosp@m.ins2@.nosp@m.gmai.nosp@m.l.com)

Function Documentation

static basic::Tracer TR ( "protocols.rna.movers.ERRASER2Protocol"  )

static