protocols::antibody_legacy::AntibodyModeler Member List

This is the complete list of members for protocols::antibody_legacy::AntibodyModeler, including all inherited members.

all_cdr_VL_VH_fold_tree(core::pose::Pose &pose_in, const loops::Loops &loops)	protocols::antibody_legacy::AntibodyModeler
antibody_in_	protocols::antibody_legacy::AntibodyModeler	private
AntibodyModeler()	protocols::antibody_legacy::AntibodyModeler
apply(core::pose::Pose &pose_in) override	protocols::antibody_legacy::AntibodyModeler	virtual
benchmark_	protocols::antibody_legacy::AntibodyModeler	private
camelid_	protocols::antibody_legacy::AntibodyModeler	private
camelid_constraints_	protocols::antibody_legacy::AntibodyModeler	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const override	protocols::antibody_legacy::AntibodyModeler	virtual
create()	protocols::moves::Mover	virtual
cst_weight_	protocols::antibody_legacy::AntibodyModeler	private
display_constraint_residues()	protocols::antibody_legacy::AntibodyModeler
fresh_instance() const	protocols::moves::Mover	virtual
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const override	protocols::antibody_legacy::AntibodyModeler	virtual
get_native_pose() const	protocols::moves::Mover
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_type() const	protocols::moves::Mover	inline
global_loop_rmsd(const core::pose::Pose &pose_in, const core::pose::Pose &native_pose, std::string cdr_type)	protocols::antibody_legacy::AntibodyModeler
graft_h1_	protocols::antibody_legacy::AntibodyModeler	private
graft_h2_	protocols::antibody_legacy::AntibodyModeler	private
graft_h3_	protocols::antibody_legacy::AntibodyModeler	private
graft_l1_	protocols::antibody_legacy::AntibodyModeler	private
graft_l2_	protocols::antibody_legacy::AntibodyModeler	private
graft_l3_	protocols::antibody_legacy::AntibodyModeler	private
H3_base_library_	protocols::antibody_legacy::AntibodyModeler	private
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
init_for_input_yet_	protocols::antibody_legacy::AntibodyModeler	private
init_from_options()	protocols::antibody_legacy::AntibodyModeler
init_on_new_input()	protocols::antibody_legacy::AntibodyModeler	virtual
init_task_factory_	protocols::antibody_legacy::AntibodyModeler	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
model_h3_	protocols::antibody_legacy::AntibodyModeler	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
name()	protocols::moves::Mover	inlinestatic
native_filename_	protocols::antibody_legacy::AntibodyModeler	private
native_pose_	protocols::antibody_legacy::AntibodyModeler	private
native_present_	protocols::antibody_legacy::AntibodyModeler	private
offset_frags_	protocols::antibody_legacy::AntibodyModeler	private
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data)	protocols::moves::Mover	virtual
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::moves::Mover	virtual
read_and_store_fragments()	protocols::antibody_legacy::AntibodyModeler
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
relax_cdrs()	protocols::antibody_legacy::AntibodyModeler
repulsive_ramp(core::pose::Pose &pose_in, loops::Loops loops_in)	protocols::antibody_legacy::AntibodyModeler
reset_status()	protocols::moves::Mover
score_map_	protocols::antibody_legacy::AntibodyModeler	private
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_default()	protocols::antibody_legacy::AntibodyModeler
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_snugdock_foldtree(core::pose::Pose &pose_in)	protocols::antibody_legacy::AntibodyModeler
set_type(std::string const &setting)	protocols::moves::Mover	inline
setup_packer_task(core::pose::Pose &pose_in)	protocols::antibody_legacy::AntibodyModeler
setup_simple_fold_tree(core::Size jumppoint1, core::Size cutpoint, core::Size jumppoint2, core::Size nres, core::pose::Pose &pose_in)	protocols::antibody_legacy::AntibodyModeler
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
snugfit_	protocols::antibody_legacy::AntibodyModeler	private
snugfit_MC_min(core::pose::Pose &pose_in, core::kinematics::MoveMapOP cdr_dock_map, core::Size cycles, core::Real minimization_threshold, core::scoring::ScoreFunctionOP scorefxn, core::scoring::ScoreFunctionOP pack_scorefxn, utility::vector1< bool > is_flexible)	protocols::antibody_legacy::AntibodyModeler
snugfit_mcm_protocol(core::pose::Pose &pose_in, loops::Loops loops_in)	protocols::antibody_legacy::AntibodyModeler
start_pose_	protocols::antibody_legacy::AntibodyModeler	private
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
tf_	protocols::antibody_legacy::AntibodyModeler	private
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
~AntibodyModeler() override	protocols::antibody_legacy::AntibodyModeler