core::pack::interaction_graph::LazyNode Class Reference

#include <LazyInteractionGraph.hh>

Inheritance diagram for core::pack::interaction_graph::LazyNode:

Public Member Functions
	LazyNode (InteractionGraphBase *owner, int node_id, int num_states)
	main constructor, no default or copy constructors More...
	~LazyNode () override
void	prepare_for_simulated_annealing () override
void	print () const override
bool	state_unassigned () const override
virtual core::PackerEnergy	get_totalE () const
void	assign_zero_state () override
void	assign_state (int new_state)
void	partial_assign_state (int new_state)
void	complete_state_assignment ()
int	get_current_state () const
core::PackerEnergy	get_one_body_energy_current_state () const
core::PackerEnergy	project_deltaE_for_substitution (int alternate_state, core::PackerEnergy &prev_node_energy)
void	commit_considered_substitution ()
core::PackerEnergy	compute_pair_energy_for_current_state (int edge_making_energy_request)
void	acknowledge_neighbors_state_substitution (int edge_to_altered_neighbor, core::PackerEnergy new_edge_energy, int other_node_new_state, SparseMatrixIndex const &other_node_new_state_sparse_info)
void	acknowledge_neighbors_partial_state_substitution (int edge_to_altered_neighbor, int other_node_new_, SparseMatrixIndex const &other_node_new_state_sparse_info)
SparseMatrixIndex const &	get_sparse_mat_info_for_curr_state () const
void	print_internal_energies () const
void	update_internal_energy_sums ()
unsigned int	count_static_memory () const override
unsigned int	count_dynamic_memory () const override
	memory accounting scheme More...
virtual int	aatype_for_state (int state) const
Public Member Functions inherited from core::pack::interaction_graph::OnTheFlyNode
	OnTheFlyNode (InteractionGraphBase *owner, int node_id, int num_states)
	main constructor, no default or copy constructors More...
	~OnTheFlyNode () override
void	set_rotamers (rotamer_set::RotamerSetCOP rotamers)
void	zero_one_body_energies () override
void	add_to_one_body_energies (ObjexxFCL::FArray1< core::PackerEnergy > &energy1b) override
void	update_one_body_energy (int state, core::PackerEnergy energy) override
virtual void	set_one_body_energy (int state, core::PackerEnergy energy)
void	add_to_one_body_energy (int state, core::PackerEnergy energy) override
virtual void	zero_one_body_energy (int state)
int	get_num_aa_types () const
utility::vector1< int > &	get_num_states_for_aa_types ()
utility::vector1< int > const &	get_num_states_for_aa_types () const
int	get_num_states_for_aa_type (int aa_type)
SparseMatrixIndex const &	get_sparse_mat_info_for_state (int state) const
int	get_state_offset_for_aatype (int aatype) const
core::PackerEnergy	get_one_body_energy (int state) const
bool	distinguish_backbone_and_sidechain () const
void	distinguish_backbone_and_sidechain (bool setting)
unsigned int	count_dynamic_memory () const override
core::PackerEnergy	compute_rotamer_pair_energy (int edge_making_energy_request, int state_this, int state_other) const
Public Member Functions inherited from core::pack::interaction_graph::FixedBBNode
	~FixedBBNode () override
	FixedBBNode (InteractionGraphBase *owner, int node_id, int num_states)
Public Member Functions inherited from core::pack::interaction_graph::NodeBase
virtual	~NodeBase ()
	virtual destructor More...
	NodeBase (InteractionGraphBase *, int node_id, int num_states)
	Main constructor, no default constructor nor copy constructor. More...
int	get_num_states () const
	returns the number of states for this node More...
std::list< EdgeBase * >::iterator	add_edge (EdgeBase *edge_ptr)
	adds edge pointer to edge list; returns an iterator to the new list element More...
void	drop_edge (std::list< EdgeBase * >::iterator edge_iterator)
	removes an edge iterator from the node's edge list More...
void	drop_all_edges ()
	deletes all edges incident upon this node More...
EdgeBase *	find_edge (int other_node_index) const
	a slow (linear) search for an edge. The edge is identified by the index of the node to which the edge connects this node. Returns NULL when there is no such connecting edge. More...
void	depth_first_connected_component_counting ()
	performs a depth first traversal of the graph. Each node informs the graph that the traversal resulted in arriving at the node. More...
std::list< EdgeBase * > ::const_iterator	edge_list_begin ()
std::list< EdgeBase * > ::const_iterator	edge_list_end ()
int	get_node_index () const
int	get_num_incident_edges () const
int	get_num_edges_to_smaller_indexed_nodes () const
int	get_num_edges_to_larger_indexed_nodes () const
EdgeBase const *	get_incident_edge (int index) const
	These functions are public for the sake of writing good unit tests. More...
EdgeBase *	get_incident_edge (int index)
int	get_index_of_adjacent_node (int index) const
NodeBase const *	get_adjacent_node (int index) const
NodeBase *	get_adjacent_node (int index)

Protected Member Functions
core::PackerEnergy	get_curr_pd_energy_total () const
core::PackerEnergy	get_alt_pd_energy_total () const
void	set_alternate_state (int alt)
int	get_alternate_state () const
void	calc_deltaEpd (int alternate_state)
bool	considering_alternate_state () const
Protected Member Functions inherited from core::pack::interaction_graph::OnTheFlyNode
OnTheFlyEdge *	get_incident_otf_edge (int edge)
OnTheFlyEdge const *	get_incident_otf_edge (int edge) const
OnTheFlyNode *	get_adjacent_otf_node (int index)
OnTheFlyNode const *	get_adjacent_otf_node (int index) const
OnTheFlyInteractionGraph *	get_on_the_fly_owner ()
OnTheFlyInteractionGraph const *	get_on_the_fly_owner () const
conformation::Residue const &	get_rotamer (int state) const
BoundingSphere const &	sc_bounding_sphere (int state) const
BoundingSphere const &	bb_bounding_sphere () const
Protected Member Functions inherited from core::pack::interaction_graph::NodeBase
void	update_edge_vector ()
	converts edge-list to edge-vector representation More...
bool	get_edge_vector_up_to_date () const
InteractionGraphBase const *	get_owner () const
InteractionGraphBase *	get_owner ()

Private Member Functions
void	update_internal_vectors ()
LazyEdge const *	get_incident_lazy_edge (int index) const
	Pointer Downcasts. More...
LazyEdge *	get_incident_lazy_edge (int index)
LazyNode const *	get_adjacent_lazy_node (int index) const
LazyNode *	get_adjacent_lazy_node (int index)
LazyInteractionGraph const *	get_lazy_ig_owner () const
LazyInteractionGraph *	get_lazy_ig_owner ()
	LazyNode ()
	LazyNode (LazyNode const &)
LazyNode &	operator= (LazyNode const &)

Private Attributes
ObjexxFCL::FArray3D_int	aa_offsets_for_edges_
ObjexxFCL::FArray2D_int	num_states_for_aa_type_for_higher_indexed_neighbor_
std::vector < ObjexxFCL::FArray1A < core::PackerEnergy > >	edge_matrix_ptrs_
std::vector< int >	neighbors_curr_state_
std::vector< SparseMatrixIndex >	neighbors_curr_state_sparse_info_
int	current_state_
SparseMatrixIndex	curr_state_sparse_mat_info_
core::PackerEnergy	curr_state_one_body_energy_
core::PackerEnergy	curr_state_total_energy_
std::vector< core::PackerEnergy >	curr_state_two_body_energies_
int	alternate_state_
SparseMatrixIndex	alt_state_sparse_mat_info_
core::PackerEnergy	alternate_state_one_body_energy_
core::PackerEnergy	alternate_state_total_energy_
std::vector< core::PackerEnergy >	alternate_state_two_body_energies_
bool	alternate_state_is_being_considered_
bool	procrastinated_

Additional Inherited Members
Public Types inherited from core::pack::interaction_graph::OnTheFlyNode
typedef std::pair< Vector, Real >	BoundingSphere

Constructor & Destructor Documentation

core::pack::interaction_graph::LazyNode::LazyNode	(	InteractionGraphBase *	owner,
		int	node_id,
		int	num_states
	)

main constructor, no default or copy constructors

Parameters

par Global Read:

Global Write:

Remarks

References:

Author

apl

core::pack::interaction_graph::LazyNode::~LazyNode ( )

overridedefault

Parameters

par Global Read:

Global Write:

Remarks

References:

Author

apl

core::pack::interaction_graph::LazyNode::LazyNode ( )

private

Referenced by count_static_memory().

core::pack::interaction_graph::LazyNode::LazyNode ( LazyNode const &  )

private

Member Function Documentation

int core::pack::interaction_graph::LazyNode::aatype_for_state ( int  state ) const

virtual

References core::pack::interaction_graph::SparseMatrixIndex::get_aa_type(), and core::pack::interaction_graph::OnTheFlyNode::get_sparse_mat_info_for_state().

Referenced by core::pack::interaction_graph::LazyInteractionGraph::aatype_for_node_state().

void core::pack::interaction_graph::LazyNode::acknowledge_neighbors_partial_state_substitution	(	int	edge_to_altered_neighbor,
		int	other_node_new_state,
		SparseMatrixIndex const &	other_node_new_state_sparse_info
	)

Parameters

par Global Read:

Global Write:

Remarks

References:

Author

apl

References curr_state_total_energy_, curr_state_two_body_energies_, neighbors_curr_state_, and neighbors_curr_state_sparse_info_.

Referenced by core::pack::interaction_graph::LazyEdge::acknowledge_partial_state_change().

void core::pack::interaction_graph::LazyNode::acknowledge_neighbors_state_substitution ( int  edge_to_altered_neighbor, core::PackerEnergy  new_edge_energy, int  other_node_new_state, SparseMatrixIndex const &  other_node_new_state_sparse_info  )

inline

Parameters

par Global Read:

Global Write:

Remarks

References:

Author

apl

References curr_state_total_energy_, curr_state_two_body_energies_, neighbors_curr_state_, and neighbors_curr_state_sparse_info_.

Referenced by core::pack::interaction_graph::LazyEdge::acknowledge_state_change(), core::pack::interaction_graph::LazyEdge::acknowledge_state_zeroed(), and core::pack::interaction_graph::LazyEdge::acknowledge_substitution().

void core::pack::interaction_graph::LazyNode::assign_state

(

int

new_state

)

Parameters

par Global Read:

Global Write:

Remarks

References:

Author

apl

References core::pack::interaction_graph::LazyEdge::acknowledge_state_change(), alternate_state_is_being_considered_, assign_zero_state(), curr_state_one_body_energy_, curr_state_sparse_mat_info_, curr_state_total_energy_, curr_state_two_body_energies_, current_state_, get_incident_lazy_edge(), core::pack::interaction_graph::NodeBase::get_node_index(), core::pack::interaction_graph::NodeBase::get_num_incident_edges(), core::pack::interaction_graph::NodeBase::get_num_states(), core::pack::interaction_graph::OnTheFlyNode::get_one_body_energy(), and core::pack::interaction_graph::OnTheFlyNode::get_sparse_mat_info_for_state().

Referenced by core::pack::interaction_graph::LazyInteractionGraph::set_state_for_node().

void core::pack::interaction_graph::LazyNode::assign_zero_state ( )

overridevirtual

Parameters

par Global Read:

Global Write:

Remarks

References:

Author

apl

Implements core::pack::interaction_graph::NodeBase.

References core::pack::interaction_graph::LazyEdge::acknowledge_state_zeroed(), alternate_state_, alternate_state_is_being_considered_, curr_state_one_body_energy_, curr_state_total_energy_, curr_state_two_body_energies_, current_state_, get_incident_lazy_edge(), core::pack::interaction_graph::NodeBase::get_node_index(), and core::pack::interaction_graph::NodeBase::get_num_incident_edges().

Referenced by assign_state(), core::pack::interaction_graph::LazyInteractionGraph::blanket_assign_state_0(), and partial_assign_state().

void core::pack::interaction_graph::LazyNode::calc_deltaEpd ( int  alternate_state )

protected

References project_deltaE_for_substitution().

void core::pack::interaction_graph::LazyNode::commit_considered_substitution

(

)

Parameters

par Global Read:

Global Write:

Remarks

References:

Author

apl

References core::pack::interaction_graph::LazyEdge::acknowledge_substitution(), alt_state_sparse_mat_info_, alternate_state_, alternate_state_is_being_considered_, alternate_state_one_body_energy_, alternate_state_total_energy_, alternate_state_two_body_energies_, curr_state_one_body_energy_, curr_state_sparse_mat_info_, curr_state_total_energy_, curr_state_two_body_energies_, current_state_, get_incident_lazy_edge(), core::pack::interaction_graph::NodeBase::get_node_index(), and core::pack::interaction_graph::NodeBase::get_num_incident_edges().

Referenced by core::pack::interaction_graph::LazyInteractionGraph::commit_considered_substitution().

void core::pack::interaction_graph::LazyNode::complete_state_assignment

(

)

Parameters

par Global Read:

Global Write:

Remarks

References:

Author

apl

References curr_state_one_body_energy_, curr_state_total_energy_, curr_state_two_body_energies_, current_state_, get_incident_lazy_edge(), core::pack::interaction_graph::NodeBase::get_num_incident_edges(), and core::pack::interaction_graph::OnTheFlyNode::get_one_body_energy().

Referenced by core::pack::interaction_graph::LazyInteractionGraph::set_network_state().

core::PackerEnergy core::pack::interaction_graph::LazyNode::compute_pair_energy_for_current_state

(

int

edge_making_energy_request

)

Parameters

par Global Read:

Global Write:

Remarks

References:

Author

apl

References core::pack::interaction_graph::OnTheFlyNode::compute_rotamer_pair_energy(), current_state_, and neighbors_curr_state_.

bool core::pack::interaction_graph::LazyNode::considering_alternate_state ( ) const

inlineprotected

References alternate_state_is_being_considered_.

unsigned int core::pack::interaction_graph::LazyNode::count_dynamic_memory ( ) const

overridevirtual

memory accounting scheme

Reimplemented from core::pack::interaction_graph::NodeBase.

References aa_offsets_for_edges_, alternate_state_two_body_energies_, core::pack::interaction_graph::OnTheFlyNode::count_dynamic_memory(), curr_state_two_body_energies_, edge_matrix_ptrs_, neighbors_curr_state_, neighbors_curr_state_sparse_info_, and num_states_for_aa_type_for_higher_indexed_neighbor_.

unsigned int core::pack::interaction_graph::LazyNode::count_static_memory ( ) const

overridevirtual

Parameters

par Global Read:

Global Write:

Remarks

References:

Author

apl

Implements core::pack::interaction_graph::OnTheFlyNode.

References LazyNode().

LazyNode const * core::pack::interaction_graph::LazyNode::get_adjacent_lazy_node ( int  index ) const

inlineprivate

References core::pack::interaction_graph::NodeBase::get_adjacent_node().

LazyNode * core::pack::interaction_graph::LazyNode::get_adjacent_lazy_node ( int  index )

inlineprivate

References core::pack::interaction_graph::NodeBase::get_adjacent_node().

core::PackerEnergy core::pack::interaction_graph::LazyNode::get_alt_pd_energy_total ( ) const

inlineprotected

References alternate_state_total_energy_.

int core::pack::interaction_graph::LazyNode::get_alternate_state ( ) const

inlineprotected

References alternate_state_.

core::PackerEnergy core::pack::interaction_graph::LazyNode::get_curr_pd_energy_total ( ) const

inlineprotected

References curr_state_total_energy_.

int core::pack::interaction_graph::LazyNode::get_current_state ( ) const

inline

References current_state_.

Referenced by core::pack::interaction_graph::LazyEdge::acknowledge_state_change(), core::pack::interaction_graph::LazyEdge::get_energy_following_partial_state_assignment(), and core::pack::interaction_graph::LazyInteractionGraph::print_current_state_assignment().

LazyEdge const * core::pack::interaction_graph::LazyNode::get_incident_lazy_edge ( int  index ) const

inlineprivate

Pointer Downcasts.

References core::pack::interaction_graph::NodeBase::get_incident_edge().

Referenced by assign_state(), assign_zero_state(), commit_considered_substitution(), complete_state_assignment(), partial_assign_state(), update_internal_energy_sums(), and update_internal_vectors().

LazyEdge * core::pack::interaction_graph::LazyNode::get_incident_lazy_edge ( int  index )

inlineprivate

References core::pack::interaction_graph::NodeBase::get_incident_edge().

LazyInteractionGraph const * core::pack::interaction_graph::LazyNode::get_lazy_ig_owner ( ) const

inlineprivate

References core::pack::interaction_graph::NodeBase::get_owner().

LazyInteractionGraph * core::pack::interaction_graph::LazyNode::get_lazy_ig_owner ( )

inlineprivate

References core::pack::interaction_graph::NodeBase::get_owner().

core::PackerEnergy core::pack::interaction_graph::LazyNode::get_one_body_energy_current_state ( ) const

inline

References curr_state_one_body_energy_.

Referenced by core::pack::interaction_graph::LazyInteractionGraph::get_energy_sum_for_vertex_group().

SparseMatrixIndex const & core::pack::interaction_graph::LazyNode::get_sparse_mat_info_for_curr_state ( ) const

inline

Parameters

par Global Read:

Global Write:

Remarks

References:

Author

apl

References current_state_, and core::pack::interaction_graph::OnTheFlyNode::get_sparse_mat_info_for_state().

Referenced by core::pack::interaction_graph::LazyEdge::get_energy_following_partial_state_assignment().

virtual core::PackerEnergy core::pack::interaction_graph::LazyNode::get_totalE ( ) const

inlinevirtual

References curr_state_total_energy_.

LazyNode& core::pack::interaction_graph::LazyNode::operator= ( LazyNode const &  )

private

void core::pack::interaction_graph::LazyNode::partial_assign_state

(

int

new_state

)

Parameters

par Global Read:

Global Write:

Remarks

References:

Author

apl

References core::pack::interaction_graph::LazyEdge::acknowledge_partial_state_change(), alternate_state_is_being_considered_, assign_zero_state(), curr_state_sparse_mat_info_, current_state_, get_incident_lazy_edge(), core::pack::interaction_graph::NodeBase::get_node_index(), core::pack::interaction_graph::NodeBase::get_num_incident_edges(), and core::pack::interaction_graph::OnTheFlyNode::get_sparse_mat_info_for_state().

Referenced by core::pack::interaction_graph::LazyInteractionGraph::set_network_state().

void core::pack::interaction_graph::LazyNode::prepare_for_simulated_annealing ( )

overridevirtual

Parameters

par Global Read:

Global Write:

Remarks

References:

Author

apl

Implements core::pack::interaction_graph::NodeBase.

References core::pack::interaction_graph::NodeBase::get_edge_vector_up_to_date(), and update_internal_vectors().

void core::pack::interaction_graph::LazyNode::print ( ) const

overridevirtual

Parameters

par Global Read:

Global Write:

Remarks

References:

Author

apl

Implements core::pack::interaction_graph::NodeBase.

References alternate_state_is_being_considered_, alternate_state_one_body_energy_, alternate_state_two_body_energies_, curr_state_one_body_energy_, curr_state_sparse_mat_info_, curr_state_two_body_energies_, current_state_, core::pack::interaction_graph::SparseMatrixIndex::get_aa_type(), core::pack::interaction_graph::NodeBase::get_index_of_adjacent_node(), core::pack::interaction_graph::NodeBase::get_node_index(), core::pack::interaction_graph::NodeBase::get_num_incident_edges(), core::pack::interaction_graph::NodeBase::get_num_states(), and core::pack::interaction_graph::SparseMatrixIndex::get_state_ind_for_this_aa_type().

Referenced by core::pack::interaction_graph::LazyInteractionGraph::print_current_state_assignment().

void core::pack::interaction_graph::LazyNode::print_internal_energies

(

)

const

Parameters

par Global Read:

Global Write:

Remarks

References:

Author

apl

References curr_state_one_body_energy_, curr_state_sparse_mat_info_, curr_state_total_energy_, curr_state_two_body_energies_, current_state_, core::pack::interaction_graph::SparseMatrixIndex::get_aa_type(), core::pack::interaction_graph::NodeBase::get_num_incident_edges(), and core::pack::interaction_graph::SparseMatrixIndex::get_state_ind_for_this_aa_type().

core::PackerEnergy core::pack::interaction_graph::LazyNode::project_deltaE_for_substitution ( int  alternate_state, core::PackerEnergy &  prev_node_energy  )

inline

Parameters

par Global Read:

Global Write:

Remarks

References:

Author

apl

References core::pack::interaction_graph::LazyEdge::NOT_YET_COMPUTED_ENERGY, core::pack::interaction_graph::LazyEdge::store_interaction_energy_first_node(), and core::pack::interaction_graph::LazyEdge::store_interaction_energy_second_node().

Referenced by calc_deltaEpd().

void core::pack::interaction_graph::LazyNode::set_alternate_state ( int  alt )

inlineprotected

References alternate_state_.

bool core::pack::interaction_graph::LazyNode::state_unassigned ( ) const

inlineoverridevirtual

Implements core::pack::interaction_graph::NodeBase.

References current_state_.

void core::pack::interaction_graph::LazyNode::update_internal_energy_sums

(

)

Parameters

par Global Read:

Global Write:

Remarks

References:

Author

apl

References curr_state_one_body_energy_, curr_state_total_energy_, core::pack::interaction_graph::LazyEdge::get_current_two_body_energy(), core::pack::interaction_graph::NodeBase::get_edge_vector_up_to_date(), get_incident_lazy_edge(), and core::pack::interaction_graph::NodeBase::get_num_incident_edges().

void core::pack::interaction_graph::LazyNode::update_internal_vectors ( )

private

Parameters

par Global Read:

Global Write:

Remarks

References:

Author

apl

References aa_offsets_for_edges_, alternate_state_two_body_energies_, curr_state_two_body_energies_, edge_matrix_ptrs_, core::pack::interaction_graph::LazyEdge::get_edge_table_ptr(), get_incident_lazy_edge(), core::pack::interaction_graph::NodeBase::get_index_of_adjacent_node(), core::pack::interaction_graph::NodeBase::get_node_index(), core::pack::interaction_graph::OnTheFlyNode::get_num_aa_types(), core::pack::interaction_graph::NodeBase::get_num_edges_to_larger_indexed_nodes(), core::pack::interaction_graph::NodeBase::get_num_incident_edges(), core::pack::interaction_graph::LazyEdge::get_offsets_for_aatypes(), core::pack::interaction_graph::LazyEdge::get_second_node_num_states_per_aa(), core::pack::interaction_graph::LazyEdge::get_two_body_table_size(), neighbors_curr_state_, neighbors_curr_state_sparse_info_, num_states_for_aa_type_for_higher_indexed_neighbor_, and core::pack::interaction_graph::NodeBase::update_edge_vector().

Referenced by prepare_for_simulated_annealing().

Member Data Documentation

ObjexxFCL::FArray3D_int core::pack::interaction_graph::LazyNode::aa_offsets_for_edges_

private

Referenced by count_dynamic_memory(), and update_internal_vectors().

SparseMatrixIndex core::pack::interaction_graph::LazyNode::alt_state_sparse_mat_info_

private

Referenced by commit_considered_substitution().

int core::pack::interaction_graph::LazyNode::alternate_state_

private

Referenced by assign_zero_state(), commit_considered_substitution(), get_alternate_state(), and set_alternate_state().

bool core::pack::interaction_graph::LazyNode::alternate_state_is_being_considered_

private

Referenced by assign_state(), assign_zero_state(), commit_considered_substitution(), considering_alternate_state(), partial_assign_state(), and print().

core::PackerEnergy core::pack::interaction_graph::LazyNode::alternate_state_one_body_energy_

private

Referenced by commit_considered_substitution(), and print().

core::PackerEnergy core::pack::interaction_graph::LazyNode::alternate_state_total_energy_

private

Referenced by commit_considered_substitution(), and get_alt_pd_energy_total().

std::vector< core::PackerEnergy > core::pack::interaction_graph::LazyNode::alternate_state_two_body_energies_

private

Referenced by commit_considered_substitution(), count_dynamic_memory(), print(), and update_internal_vectors().

core::PackerEnergy core::pack::interaction_graph::LazyNode::curr_state_one_body_energy_

private

Referenced by assign_state(), assign_zero_state(), commit_considered_substitution(), complete_state_assignment(), get_one_body_energy_current_state(), print(), print_internal_energies(), and update_internal_energy_sums().

SparseMatrixIndex core::pack::interaction_graph::LazyNode::curr_state_sparse_mat_info_

private

Referenced by assign_state(), commit_considered_substitution(), partial_assign_state(), print(), and print_internal_energies().

core::PackerEnergy core::pack::interaction_graph::LazyNode::curr_state_total_energy_

private

Referenced by acknowledge_neighbors_partial_state_substitution(), acknowledge_neighbors_state_substitution(), assign_state(), assign_zero_state(), commit_considered_substitution(), complete_state_assignment(), get_curr_pd_energy_total(), get_totalE(), print_internal_energies(), and update_internal_energy_sums().

std::vector< core::PackerEnergy > core::pack::interaction_graph::LazyNode::curr_state_two_body_energies_

private

Referenced by acknowledge_neighbors_partial_state_substitution(), acknowledge_neighbors_state_substitution(), assign_state(), assign_zero_state(), commit_considered_substitution(), complete_state_assignment(), count_dynamic_memory(), print(), print_internal_energies(), and update_internal_vectors().

int core::pack::interaction_graph::LazyNode::current_state_

private

Referenced by assign_state(), assign_zero_state(), commit_considered_substitution(), complete_state_assignment(), compute_pair_energy_for_current_state(), get_current_state(), get_sparse_mat_info_for_curr_state(), partial_assign_state(), print(), print_internal_energies(), and state_unassigned().

std::vector< ObjexxFCL::FArray1A< core::PackerEnergy > > core::pack::interaction_graph::LazyNode::edge_matrix_ptrs_

private

Referenced by count_dynamic_memory(), and update_internal_vectors().

std::vector< int > core::pack::interaction_graph::LazyNode::neighbors_curr_state_

private

Referenced by acknowledge_neighbors_partial_state_substitution(), acknowledge_neighbors_state_substitution(), compute_pair_energy_for_current_state(), count_dynamic_memory(), and update_internal_vectors().

std::vector< SparseMatrixIndex > core::pack::interaction_graph::LazyNode::neighbors_curr_state_sparse_info_

private

Referenced by acknowledge_neighbors_partial_state_substitution(), acknowledge_neighbors_state_substitution(), count_dynamic_memory(), and update_internal_vectors().

ObjexxFCL::FArray2D_int core::pack::interaction_graph::LazyNode::num_states_for_aa_type_for_higher_indexed_neighbor_

private

Referenced by count_dynamic_memory(), and update_internal_vectors().

bool core::pack::interaction_graph::LazyNode::procrastinated_

private

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The documentation for this class was generated from the following files:

• src/core/pack/interaction_graph/LazyInteractionGraph.hh
• src/core/pack/interaction_graph/LazyInteractionGraph.cc