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Rosetta
2021.16
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Rosetta
2021.16
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This is the complete list of members for core::scoring::bin_transitions::BinTransitionCalculator, including all inherited members.
| add_bin_transition_data() | core::scoring::bin_transitions::BinTransitionCalculator | inlineprivate |
| are_normally_bonded(core::conformation::Residue const &thisres, core::conformation::Residue const &prevres) const | core::scoring::bin_transitions::BinTransitionCalculator | private |
| biased_mainchain_torsions(core::Size const bin_index, bool const iplus1, core::Size const data_index, utility::vector1< core::Real > &mainchain_torsions) const | core::scoring::bin_transitions::BinTransitionCalculator | private |
| bin_definition_exists(std::string const &name) const | core::scoring::bin_transitions::BinTransitionCalculator | |
| bin_params_file_ | core::scoring::bin_transitions::BinTransitionCalculator | private |
| bin_params_loaded() const | core::scoring::bin_transitions::BinTransitionCalculator | inline |
| bin_params_loaded_ | core::scoring::bin_transitions::BinTransitionCalculator | private |
| bin_transition_data(core::Size const index) const | core::scoring::bin_transitions::BinTransitionCalculator | inlineprivate |
| bin_transition_data_ | core::scoring::bin_transitions::BinTransitionCalculator | private |
| BinTransitionCalculator() | core::scoring::bin_transitions::BinTransitionCalculator | |
| BinTransitionCalculator(BinTransitionCalculator const &src) | core::scoring::bin_transitions::BinTransitionCalculator | |
| clone() const | core::scoring::bin_transitions::BinTransitionCalculator | |
| find_data(core::conformation::Residue const &res_i, core::conformation::Residue const &res_iplus1, core::Size &data_index) const | core::scoring::bin_transitions::BinTransitionCalculator | |
| find_data_and_bin(std::string const &bin_name, core::conformation::Residue const &res, core::Size &data_index, core::Size &bin_index, bool const use_iplus1) const | core::scoring::bin_transitions::BinTransitionCalculator | |
| has_another_matrix(utility::vector1< std::string > const &lines, core::Size &firstline, core::Size &lastline) const | core::scoring::bin_transitions::BinTransitionCalculator | private |
| initialize_matrix(utility::vector1< std::string > const &lines, core::Size const firstline, core::Size const lastline, BinTransitionDataOP curdata) | core::scoring::bin_transitions::BinTransitionCalculator | private |
| is_in_bin(core::conformation::Residue const &res, std::string const &bin_name) const | core::scoring::bin_transitions::BinTransitionCalculator | |
| is_in_bin(core::conformation::Residue const &res, core::Size const data_index, core::Size const bin_index, bool const use_iplus1) const | core::scoring::bin_transitions::BinTransitionCalculator | |
| load_bin_params(std::string const &filename) | core::scoring::bin_transitions::BinTransitionCalculator | |
| load_bin_params_from_file_contents(std::string const &filecontents) | core::scoring::bin_transitions::BinTransitionCalculator | |
| n_bin_transition_data() const | core::scoring::bin_transitions::BinTransitionCalculator | inline |
| p_i_given_iplus1(core::conformation::Residue const &rsd_i, core::conformation::Residue const &rsd_iplus1, core::Real &probability) const | core::scoring::bin_transitions::BinTransitionCalculator | |
| p_iplus1_given_i(core::conformation::Residue const &rsd_i, core::conformation::Residue const &rsd_iplus1, core::Real &probability) const | core::scoring::bin_transitions::BinTransitionCalculator | |
| parse_lines(utility::vector1< std::string > const &lines) | core::scoring::bin_transitions::BinTransitionCalculator | private |
| parse_mainchain_torsions(utility::vector1< std::string > const &lines, core::Size const firstline, core::Size const lastline, BinTransitionDataOP curdata) | core::scoring::bin_transitions::BinTransitionCalculator | private |
| populate_matrix(utility::vector1< std::string > const &lines, core::Size const firstline, core::Size const lastline, BinTransitionDataOP curdata) | core::scoring::bin_transitions::BinTransitionCalculator | private |
| random_bin(core::conformation::Residue const &res, bool &iplus1, core::Size &data_index) const | core::scoring::bin_transitions::BinTransitionCalculator | |
| random_bin_based_on_prev_and_next(core::conformation::Conformation const &conformation, core::Size const res_index, bool const must_switch_bins, core::Size &data_index_i, core::Size &data_index_iplus1) const | core::scoring::bin_transitions::BinTransitionCalculator | |
| random_bin_based_on_previous(core::conformation::Residue const &thisres, core::conformation::Residue const &prevres, utility::vector1< core::Real > const &prev_torsions, core::Size &data_index) const | core::scoring::bin_transitions::BinTransitionCalculator | |
| random_mainchain_torsions_from_bin(std::string const &bin_name, core::conformation::Conformation const &conformation, utility::vector1< core::Size > const &res_indices, utility::vector1< utility::vector1< core::Real > > &mainchain_torsions) const | core::scoring::bin_transitions::BinTransitionCalculator | |
| random_mainchain_torsions_from_bin(core::Size const bin_index, bool const iplus1, core::Size const data_index, utility::vector1< core::Real > &mainchain_torsions) const | core::scoring::bin_transitions::BinTransitionCalculator | |
| random_mainchain_torsions_from_bins(core::conformation::Conformation const &conformation, utility::vector1< core::Size > const &res_indices, utility::vector1< utility::vector1< core::Real > > &mainchain_torsions) const | core::scoring::bin_transitions::BinTransitionCalculator | |
| random_mainchain_torsions_using_adjacent_bins(core::conformation::Conformation const &conformation, core::Size const res_index, bool const must_switch_bins, utility::vector1< core::Real > &mainchain_torsions) const | core::scoring::bin_transitions::BinTransitionCalculator | |
| set_up_bins(utility::vector1< std::string > const &lines, core::Size const firstline, core::Size const lastline, BinTransitionDataOP curdata) | core::scoring::bin_transitions::BinTransitionCalculator | private |
| store_properties(utility::vector1< std::string > const &lines, core::Size const firstline, core::Size const lastline, BinTransitionDataOP curdata) | core::scoring::bin_transitions::BinTransitionCalculator | private |
| store_residue_identities(utility::vector1< std::string > const &lines, core::Size const firstline, core::Size const lastline, BinTransitionDataOP curdata) | core::scoring::bin_transitions::BinTransitionCalculator | private |
| summarize_stored_data(bool const verbose) const | core::scoring::bin_transitions::BinTransitionCalculator | |
| uniform_mainchain_torsions(core::Size const bin_index, bool const iplus1, core::Size const data_index, utility::vector1< core::Real > &mainchain_torsions) const | core::scoring::bin_transitions::BinTransitionCalculator | private |
| ~BinTransitionCalculator() override | core::scoring::bin_transitions::BinTransitionCalculator |
1.8.7