core::simple_metrics::metrics::SequenceSimilarityMetric Member List

This is the complete list of members for core::simple_metrics::metrics::SequenceSimilarityMetric, including all inherited members.

apply(std::string const &out_label, pose::Pose &pose, bool override_existing_data=false) const override	core::simple_metrics::RealMetric	virtual
core::simple_metrics::SimpleMetric::apply(pose::Pose &pose, std::string const &prefix="", std::string const &suffix="", bool override_existing_data=false) const	core::simple_metrics::SimpleMetric
apply_selector_to_native_	core::simple_metrics::metrics::SequenceSimilarityMetric	private
cached_calculate(pose::Pose const &pose, bool use_cache, std::string prefix="", std::string suffix="", bool fail_on_missing_cache=true) const	core::simple_metrics::RealMetric
calculate(pose::Pose const &pose) const override	core::simple_metrics::metrics::SequenceSimilarityMetric	virtual
clone() const override	core::simple_metrics::metrics::SequenceSimilarityMetric	virtual
complex_type_generator_for_simple_metric(utility::tag::XMLSchemaDefinition &)	core::simple_metrics::SimpleMetric	static
get_custom_type() const	core::simple_metrics::SimpleMetric
get_final_sm_type() const	core::simple_metrics::SimpleMetric
get_metric_names() const override	core::simple_metrics::RealMetric	virtual
metric() const override	core::simple_metrics::metrics::SequenceSimilarityMetric	virtual
name() const override	core::simple_metrics::metrics::SequenceSimilarityMetric	virtual
name_static()	core::simple_metrics::metrics::SequenceSimilarityMetric	static
native_pose_	core::simple_metrics::metrics::SequenceSimilarityMetric	mutableprivate
normalize_	core::simple_metrics::metrics::SequenceSimilarityMetric	private
operator=(RealMetric const &)	core::simple_metrics::RealMetric
core::simple_metrics::SimpleMetric::operator=(SimpleMetric const &)	core::simple_metrics::SimpleMetric
parse_base_tag(utility::tag::TagCOP tag)	core::simple_metrics::SimpleMetric	virtual
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data) override	core::simple_metrics::metrics::SequenceSimilarityMetric	virtual
provide_citation_info(basic::citation_manager::CitationCollectionList &) const override	core::simple_metrics::metrics::SequenceSimilarityMetric	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	core::simple_metrics::metrics::SequenceSimilarityMetric	static
RealMetric()	core::simple_metrics::RealMetric
RealMetric(RealMetric const &other)	core::simple_metrics::RealMetric
score(std::string const &seq1, std::string const &seq2, bool normalize)	core::simple_metrics::metrics::SequenceSimilarityMetric	static
selector_	core::simple_metrics::metrics::SequenceSimilarityMetric	private
SequenceSimilarityMetric()	core::simple_metrics::metrics::SequenceSimilarityMetric
SequenceSimilarityMetric(select::residue_selector::ResidueSelectorCOP selector)	core::simple_metrics::metrics::SequenceSimilarityMetric
SequenceSimilarityMetric(SequenceSimilarityMetric const &src)	core::simple_metrics::metrics::SequenceSimilarityMetric
set_apply_selector_to_native(bool setting)	core::simple_metrics::metrics::SequenceSimilarityMetric	inline
set_custom_type(std::string const &custom_type)	core::simple_metrics::SimpleMetric
set_native_pose(core::pose::PoseCOP setting)	core::simple_metrics::metrics::SequenceSimilarityMetric	inline
set_native_pose(core::pose::PoseCOP setting, bool apply_selector_to_native)	core::simple_metrics::metrics::SequenceSimilarityMetric	inline
set_normalize(bool setting)	core::simple_metrics::metrics::SequenceSimilarityMetric	inline
set_residue_selector(core::select::residue_selector::ResidueSelectorCOP selector)	core::simple_metrics::metrics::SequenceSimilarityMetric	inline
set_residue_selector(core::select::residue_selector::ResidueSelectorCOP selector, bool apply_selector_to_native)	core::simple_metrics::metrics::SequenceSimilarityMetric	inline
simple_metric_type() const	core::simple_metrics::SimpleMetric	inline
SimpleMetric(std::string const &simple_metric_type)	core::simple_metrics::SimpleMetric
SimpleMetric(SimpleMetric const &other)	core::simple_metrics::SimpleMetric
~RealMetric() override	core::simple_metrics::RealMetric
~SequenceSimilarityMetric() override	core::simple_metrics::metrics::SequenceSimilarityMetric
~SimpleMetric() override	core::simple_metrics::SimpleMetric