| acknowledge_substitution() | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | |
| add_edge(BackgroundToFirstClassEdge< V, E, G > *edge_ptr) | core::pack::interaction_graph::BackgroundNode< V, E, G > | |
| alt_state_dots_matches_current_state_dots_ | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | private |
| alt_state_exp_hphobes() const | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | inline |
| alt_state_exp_hphobes_ | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | private |
| alt_state_inv_dots() const | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | inline |
| alt_state_inv_dots_ | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | private |
| alt_state_rotamer_dots_ | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | private |
| BackgroundEdgeList typedef | core::pack::interaction_graph::BackgroundNode< V, E, G > | |
| BackgroundEdgeListIter typedef | core::pack::interaction_graph::BackgroundNode< V, E, G > | |
| BackgroundEdgeVector typedef | core::pack::interaction_graph::BackgroundNode< V, E, G > | |
| BackgroundEdgeVectorIter typedef | core::pack::interaction_graph::BackgroundNode< V, E, G > | |
| BackgroundNode(AdditionalBackgroundNodesInteractionGraph< V, E, G > *owner, int node_index) | core::pack::interaction_graph::BackgroundNode< V, E, G > | |
| count_dynamic_memory() const override | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | virtual |
| count_static_memory() const override | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | virtual |
| curr_state_exp_hphobes() const | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | inline |
| curr_state_exp_hphobes_ | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | private |
| curr_state_inv_dots() const | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | inline |
| curr_state_inv_dots_ | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | private |
| current_state_rotamer_dots_ | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | private |
| detect_overlap(HPatchNode< V, E, G > *node) const | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | |
| drop_edge(BackgroundEdgeListIter edge) | core::pack::interaction_graph::BackgroundNode< V, E, G > | |
| find_edge(int fc_node_index) | core::pack::interaction_graph::BackgroundNode< V, E, G > | |
| FirstClassNodeVector typedef | core::pack::interaction_graph::BackgroundNode< V, E, G > | |
| get_adjacent_first_class_node(int index) const | core::pack::interaction_graph::BackgroundNode< V, E, G > | inlineprotected |
| get_alt_state_rotamer_dots() | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | |
| get_alternate_sasa() const | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | |
| get_alternate_sasa(Size atom_index) const | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | |
| get_atom_atom_self_overlaps() const | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | |
| get_current_sasa() const | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | |
| get_current_sasa(Size atom_index) const | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | |
| get_current_state_rotamer_dots() | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | |
| get_edge_vector_up_to_date() const | core::pack::interaction_graph::BackgroundNode< V, E, G > | inlineprotected |
| get_hpatch_bg_edge(int index) | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | inlineprotected |
| get_hpatch_owner() const | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | inlineprotected |
| get_hphobes() const | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | inline |
| get_incident_edge(int index) const | core::pack::interaction_graph::BackgroundNode< V, E, G > | inlineprotected |
| get_index_of_adjacent_first_class_node(int index) const | core::pack::interaction_graph::BackgroundNode< V, E, G > | inlineprotected |
| get_node_index() const | core::pack::interaction_graph::BackgroundNode< V, E, G > | inlineprotected |
| get_num_incident_edges() const | core::pack::interaction_graph::BackgroundNode< V, E, G > | inlineprotected |
| get_owner() const | core::pack::interaction_graph::BackgroundNode< V, E, G > | inlineprotected |
| get_rotamer() const | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | |
| HPatchBackgroundNode(AdditionalBackgroundNodesInteractionGraph< V, E, G > *owner, int node_index) | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | |
| HPatchBackgroundNode() | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | private |
| HPatchBackgroundNode(HPatchBackgroundNode< V, E, G > const &) | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | private |
| hphobe_ats_ | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | private |
| initialize_atom_atom_overlaps() | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | private |
| initialize_bg_bg_overlap(HPatchBackgroundNode< V, E, G > &other) | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | |
| initialize_self_overlap() | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | private |
| n_alt_state_exp_hphobes() const | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | inline |
| n_curr_state_exp_hphobes() const | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | inline |
| n_hphobes() const | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | inline |
| n_hphobes_ | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | private |
| operator=(HPatchBackgroundNode< V, E, G > const &) | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | private |
| parent typedef | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | |
| prepare_for_simulated_annealing() override | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | virtual |
| prepared_for_simA_ | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | private |
| print() const override | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | virtual |
| reset_alt_state_dots() | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | |
| rotamer_ | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | private |
| self_atom_atom_overlaps_ | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | private |
| set_rotamer(conformation::ResidueOP const &rotamer) | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | |
| set_rotamer_dots(RotamerDots const &bg_rd) | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | |
| update_alt_state_exphphobes() | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | private |
| update_edge_vector() | core::pack::interaction_graph::BackgroundNode< V, E, G > | protected |
| update_state_for_substitution(HPatchNode< V, E, G > *fc_node_changing, RotamerDotsCache const &nodes_curr_overlap_with_bg_res, RotamerDotsCache const &nodes_alt_overlap_with_bg_res) | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | |
| ~BackgroundNode() | core::pack::interaction_graph::BackgroundNode< V, E, G > | virtual |
| ~HPatchBackgroundNode() override | core::pack::interaction_graph::HPatchBackgroundNode< V, E, G > | |
1.8.7