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| core::scoring::ScoreFunctionOP | core::scoring::get_score_function (bool const is_fullatom=true) |
| | A helper function which returns a scoring function held in an owning pointer according to the user's command line parameters -score:weights and -score:patch By default it returns weights=talaris2013 for fullatom, and weights=cen_std and patch="" for centroid. More...
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| core::scoring::ScoreFunctionOP | core::scoring::get_score_function (core::pose::Pose const &pose, bool const is_fullatom=true) |
| | Get a ScoreFunction from cmd-line settings and dependant on the symmetrical state of the pose. More...
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| core::scoring::ScoreFunctionOP | core::scoring::get_score_function (core::pose::Pose const &pose, utility::options::OptionCollection const &options, bool const is_fullatom=true) |
| | Get a ScoreFunction from cmd-line settings and dependant on the symmetrical state of the pose. Local Options collection. More...
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| core::scoring::ScoreFunctionOP | core::scoring::get_score_function (utility::options::OptionCollection const &options, bool const is_fullatom=true) |
| | A helper function which creates a scoring function held in an owning pointer reading from the input OptionCollection. More...
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| void | core::scoring::list_read_options_in_get_score_function (utility::options::OptionKeyList &opts) |
| | A documentation function which reports the set of options read by get_score_function. More...
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| core::scoring::ScoreFunctionOP | core::scoring::get_score_function_legacy (std::string const &pre_talaris_2013_weight_set, std::string const &pre_talaris_2013_patch_file="") |
| | A helper function that either returns a ScoreFunctionOP created by get_score_function() or the one specified by the protocol which is activated by the -restore_pre_talaris_2013_behavior flag. The purpose of this function is to preserve legacy behavior for the sake of reproducibility and so that a record of the old behavior is still preserved in the code to ease the process of reverting the change to get_score_function if that were the wrong behavior. More...
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| core::scoring::ScoreFunctionOP | core::scoring::get_score_function_legacy (utility::options::OptionCollection const &options, std::string const &pre_talaris_2013_weight_set, std::string const &pre_talaris_2013_patch_file) |
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| void | core::scoring::list_read_options_in_get_score_function_legacy (utility::options::OptionKeyList &opts) |
| | A documentation function which reports the set of options read by get_score_function_legacy. More...
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| std::string | core::scoring::get_score_functionName (bool const is_fullatom=true) |
| | use the logic of get_score_function to get the name. The name format is <weights_tag>[_<patch_tag> ... ] More...
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| std::string | core::scoring::get_current_default_score_function_name () |
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| std::string | core::scoring::basename_for_score_function (std::string const &sfxn_name) |
| | returns family name for a specific score function. For example, ref2015_cart returns ref2015 and beta_nov16_cst returns beta_nov16 Returns an empty string if no match is found More...
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| void | core::scoring::apply_set_weights (ScoreFunctionOP scorefxn, utility::vector1< std::string > const &settings) |
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1.8.7