protocols::multistate_design::MultiStatePacker Class Reference

#include <MultiStatePacker.hh>

Inheritance diagram for protocols::multistate_design::MultiStatePacker:

Public Member Functions
	MultiStatePacker ()
	~MultiStatePacker () override=default
	MultiStatePacker (core::Size num_packs)
virtual void	single_state_design (bool restrict_to_canonical=true)
core::Real	evaluate (protocols::genetic_algorithm::Entity &entity, core::Size single_state_num) override
virtual void	set_num_packs (core::Size num)
Public Member Functions inherited from protocols::multistate_design::MultiStateFitnessFunction
	MultiStateFitnessFunction ()
	~MultiStateFitnessFunction () override
virtual void	add_state (SingleStateOP state)
virtual void	add_state (core::pose::Pose const &pose, bool is_positive)
core::Real	evaluate (protocols::genetic_algorithm::Entity &entity) override
virtual core::Real	evaluate_positive_states (protocols::genetic_algorithm::Entity &entity)
virtual void	set_aggregate_function (MultiStateAggregateFunction::COP aggregate_function)
virtual MultiStateAggregateFunction::COP	aggregate_function () const
virtual void	set_scorefxn (core::scoring::ScoreFunctionCOP sf)
virtual core::scoring::ScoreFunctionCOP	scorefxn () const
virtual SingleStateCOPs	const_states (bool positive_only=false) const
	true const (read only) access to states More...
virtual SingleStateCOPs	positive_states () const
virtual core::Size	num_states () const
virtual core::Size	num_states (bool pos_neg) const
virtual core::Size	num_positive_states () const
virtual core::Size	num_negative_states () const
virtual void	add_metric_value_getter (std::string const &name, protocols::pose_metric_calculators::MetricValueGetter const &metric_value_getter)
Public Member Functions inherited from protocols::genetic_algorithm::FitnessFunction
	~FitnessFunction () override=default

Private Attributes
core::Size	num_packs_

Additional Inherited Members
Public Types inherited from protocols::multistate_design::MultiStateFitnessFunction
typedef utility::pointer::shared_ptr < MultiStateFitnessFunction >	OP
Public Types inherited from protocols::genetic_algorithm::FitnessFunction
typedef utility::pointer::shared_ptr < FitnessFunction >	OP
typedef utility::pointer::shared_ptr < FitnessFunction const >	COP
Protected Types inherited from protocols::multistate_design::MultiStateFitnessFunction
typedef std::map< std::string, protocols::pose_metric_calculators::MetricValueGetter >	MetricValueGetterMap
Protected Member Functions inherited from protocols::multistate_design::MultiStateFitnessFunction
virtual SingleStateOPs &	states ()
MetricValueGetterMap const &	metric_value_getters () const

Constructor & Destructor Documentation

protocols::multistate_design::MultiStatePacker::MultiStatePacker ( )

inline

protocols::multistate_design::MultiStatePacker::~MultiStatePacker ( )

overridedefault

protocols::multistate_design::MultiStatePacker::MultiStatePacker ( core::Size  num_packs )

inline

Member Function Documentation

Real protocols::multistate_design::MultiStatePacker::evaluate ( protocols::genetic_algorithm::Entity &  entity, core::Size  single_state_num  )

overridevirtual

Implements protocols::multistate_design::MultiStateFitnessFunction.

References protocols::comparative_modeling::features::E, protocols::multistate_design::limit_rotamer_set(), protocols::multistate_design::MultiStateFitnessFunction::metric_value_getters(), num_packs_, protocols::multistate_design::MultiStateFitnessFunction::scorefxn(), protocols::multistate_design::MultiStateEntity::single_state_entity_data(), protocols::multistate_design::MultiStateFitnessFunction::states(), and protocols::genetic_algorithm::Entity::traits().

virtual void protocols::multistate_design::MultiStatePacker::set_num_packs ( core::Size  num )

inlinevirtual

References num_packs_.

void protocols::multistate_design::MultiStatePacker::single_state_design ( bool  restrict_to_canonical = true )

virtual

References core::chemical::element::F, protocols::multistate_design::restrict_to_canonical_aas(), protocols::hybridization::score, protocols::multistate_design::MultiStateFitnessFunction::scorefxn(), protocols::multistate_design::MultiStateFitnessFunction::states(), and protocols::multistate_design::TR().

Member Data Documentation

core::Size protocols::multistate_design::MultiStatePacker::num_packs_

private

Referenced by evaluate(), and set_num_packs().

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The documentation for this class was generated from the following files:

• src/protocols/multistate_design/MultiStatePacker.hh
• src/protocols/multistate_design/MultiStatePacker.cc