protocols::ncbb::oop::OopDockDesignProtocol Member List

This is the complete list of members for protocols::ncbb::oop::OopDockDesignProtocol, including all inherited members.

apply(core::pose::Pose &pose) override	protocols::ncbb::oop::OopDockDesignProtocol	virtual
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const override	protocols::ncbb::oop::OopDockDesignProtocol	virtual
create()	protocols::moves::Mover	virtual
dock_design_loop_num_	protocols::ncbb::oop::OopDockDesignProtocol	private
final_design_min_	protocols::ncbb::oop::OopDockDesignProtocol	private
fresh_instance() const override	protocols::ncbb::oop::OopDockDesignProtocol	inlinevirtual
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const override	protocols::ncbb::oop::OopDockDesignProtocol	virtual
get_native_pose() const	protocols::moves::Mover
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_type() const	protocols::moves::Mover	inline
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
keep_history_	protocols::ncbb::oop::OopDockDesignProtocol	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
mc_initial_pose_	protocols::ncbb::oop::OopDockDesignProtocol	private
mc_temp_	protocols::ncbb::oop::OopDockDesignProtocol	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
mover_name()	protocols::ncbb::oop::OopDockDesignProtocol	static
name()	protocols::moves::Mover	inlinestatic
no_design_	protocols::ncbb::oop::OopDockDesignProtocol	private
oop_design_first_	protocols::ncbb::oop::OopDockDesignProtocol	private
OopDockDesignProtocol()	protocols::ncbb::oop::OopDockDesignProtocol
OopDockDesignProtocol(core::scoring::ScoreFunctionOP score_function, core::Real const mc_temp, core::Real const pert_mc_temp, core::Real const pert_dock_rot_mag, core::Real const pert_dock_trans_mag, core::Real const pert_pep_small_temp, core::Real const pert_pep_small_H, core::Real const pert_pep_small_L, core::Real const pert_pep_small_E, core::Real const pert_pep_shear_temp, core::Real const pert_pep_shear_H, core::Real const pert_pep_shear_L, core::Real const pert_pep_shear_E, core::Size const pert_pep_num_rep, core::Size const pert_num, core::Size const dock_design_loop_num, bool const no_design, bool const final_design_min, bool const use_soft_rep, bool const mc_initial_pose, bool const oop_design_first, bool const pymol, bool const keep_history)	protocols::ncbb::oop::OopDockDesignProtocol
OopDockDesignProtocol(core::scoring::ScoreFunctionOP score_function, core::Real const mc_temp, core::Real const pert_dock_rot_mag, core::Real const pert_dock_trans_mag, core::Size const dock_design_loop_num, bool const no_design, bool const final_design_min, bool const pymol, bool const keep_history)	protocols::ncbb::oop::OopDockDesignProtocol
parse_my_tag(utility::tag::TagCOP, basic::datacache::DataMap &) override	protocols::ncbb::oop::OopDockDesignProtocol	virtual
pert_dock_rot_mag_	protocols::ncbb::oop::OopDockDesignProtocol	private
pert_dock_trans_mag_	protocols::ncbb::oop::OopDockDesignProtocol	private
pert_mc_temp_	protocols::ncbb::oop::OopDockDesignProtocol	private
pert_num_	protocols::ncbb::oop::OopDockDesignProtocol	private
pert_pep_num_rep_	protocols::ncbb::oop::OopDockDesignProtocol	private
pert_pep_shear_E_	protocols::ncbb::oop::OopDockDesignProtocol	private
pert_pep_shear_H_	protocols::ncbb::oop::OopDockDesignProtocol	private
pert_pep_shear_L_	protocols::ncbb::oop::OopDockDesignProtocol	private
pert_pep_shear_temp_	protocols::ncbb::oop::OopDockDesignProtocol	private
pert_pep_small_E_	protocols::ncbb::oop::OopDockDesignProtocol	private
pert_pep_small_H_	protocols::ncbb::oop::OopDockDesignProtocol	private
pert_pep_small_L_	protocols::ncbb::oop::OopDockDesignProtocol	private
pert_pep_small_temp_	protocols::ncbb::oop::OopDockDesignProtocol	private
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::moves::Mover	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::ncbb::oop::OopDockDesignProtocol	static
pymol_	protocols::ncbb::oop::OopDockDesignProtocol	private
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
score_fxn_	protocols::ncbb::oop::OopDockDesignProtocol	private
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_type(std::string const &setting)	protocols::moves::Mover	inline
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
use_soft_rep_	protocols::ncbb::oop::OopDockDesignProtocol	private
~OopDockDesignProtocol() override	protocols::ncbb::oop::OopDockDesignProtocol	inline