| check_chain_closable_geometry(numeric::xyzVector< core::Real > const &xyz_1, numeric::xyzVector< core::Real > const &xyz_2) const | protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker | |
| check_chain_closable_geometry(core::conformation::Residue const &five_prime_residue, core::conformation::Residue const &three_prime_residue) const | protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker | |
| check_chain_closable_geometry(core::pose::Pose const &five_prime_pose, core::pose::Pose const &three_prime_pose) const | protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker | private |
| check_chain_closable_geometry(core::pose::Pose const &five_prime_pose, core::pose::Pose const &three_prime_pose, bool const strict) const | protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker | private |
| check_chain_closable_geometry(core::Size const &reference_res, utility::vector1< core::pose::PoseOP > const &pose_data_list, utility::vector1< core::conformation::ResidueOP > const &rsd_at_origin_list, core::kinematics::Stub const &moving_res_base_stub, bool const is_prepend) const | protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker | private |
| check_chain_closable_geometry(core::Size const &reference_res, core::pose::Pose const &pose, utility::vector1< core::conformation::ResidueOP > const &rsd_at_origin_list, core::kinematics::Stub const &moving_res_base_stub, bool const is_prepend) const | protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker | private |
| check_chain_closable_geometry_strict(core::pose::Pose const &five_prime_pose, core::pose::Pose const &three_prime_pose) const | protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker | private |
| check_screen(core::pose::Pose const &pose, bool const strict=false) const | protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker | |
| check_screen(core::pose::Pose const &moving_pose, core::pose::Pose const &reference_pose, bool const is_prepend, bool const strict=false) const | protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker | |
| check_screen(core::pose::Pose const &pose, utility::vector1< core::conformation::ResidueOP > const &rsd_at_origin_list, core::kinematics::Stub const &moving_res_base_stub, core::Size const &reference_res) const | protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker | |
| check_screen(utility::vector1< core::pose::PoseOP > const &pose_data_list, utility::vector1< core::conformation::ResidueOP > const &rsd_at_origin_list, core::kinematics::Stub const &moving_res_base_stub, core::Size const &reference_res) const | protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker | |
| dist_squared() const | protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker | inline |
| dist_squared_ | protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker | mutableprivate |
| five_prime_chain_break_res() const | protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker | inline |
| five_prime_chain_break_res_ | protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker | private |
| gap_size_ | protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker | private |
| get_C4_C3_distance_range(core::conformation::Residue const &five_prime_rsd, core::conformation::Residue const &three_prime_rsd, core::Distance &C4_C3_dist_min, core::Distance &C4_C3_dist_max) const | protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker | private |
| initialize_distance_range() | protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker | private |
| max_dist_squared() const | protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker | inline |
| max_dist_squared_ | protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker | private |
| min_dist_squared_ | protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker | private |
| RNA_ChainClosableGeometryChecker(core::Size const five_prime_chain_break_res, core::Size const gap_size) | protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker | |
| RNA_ChainClosableGeometryChecker(core::Size const five_prime_chain_break_res, core::Size const three_prime_chain_break_res, core::Size const gap_size) | protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker | |
| three_prime_chain_break_res() const | protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker | inline |
| three_prime_chain_break_res_ | protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker | private |
| ~RNA_ChainClosableGeometryChecker() override | protocols::stepwise::modeler::rna::checker::RNA_ChainClosableGeometryChecker | |
1.8.7