protocols::multistate_design::MultiStateEntity Class Reference

#include <MultiStateEntity.hh>

Inheritance diagram for protocols::multistate_design::MultiStateEntity:

Public Types
typedef genetic_algorithm::Entity::OP	EntityOP
typedef genetic_algorithm::EntityElementOP	EntityElementOP
Public Types inherited from protocols::genetic_algorithm::Entity
typedef utility::pointer::shared_ptr < Entity >	OP
typedef utility::pointer::shared_ptr < Entity const >	COP
typedef utility::pointer::weak_ptr < Entity const >	CAP
typedef utility::vector1< COP >	COPs
typedef utility::vector1< CAP >	CAPs

Public Member Functions
	MultiStateEntity ()
	MultiStateEntity (MultiStateEntity const &entity)
	~MultiStateEntity () override
EntityOP	clone () const override
void	show (std::ostream &os) const override
void	write_checkpoint (std::ostream &os) const override
bool	read_checkpoint (std::istream &is) override
utility::vector1 < SingleStateEntityData > const &	single_state_entity_data () const
utility::vector1 < SingleStateEntityData > &	single_state_entity_data ()
Public Member Functions inherited from protocols::genetic_algorithm::Entity
	Entity ()
	Entity (Entity const &entity)
Entity &	operator= (Entity const &)
	~Entity () override
	Entity (std::string const &line)
	construct Entity from std::string (e.g. from file) More...
virtual void	set_traits_size (core::Size size)
virtual void	set_traits (EntityElements const &traits)
virtual EntityElements const &	traits () const
virtual void	set_entity_element (core::Size index, EntityElementOP element)
virtual void	set_fitness (core::Real val)
virtual core::Real	fitness () const
virtual bool	fitness_valid () const
virtual bool	operator== (Entity const &other) const
virtual bool	operator< (Entity const &other) const
virtual std::string	to_string () const
virtual std::string	traits_string () const

Private Attributes
utility::vector1 < SingleStateEntityData >	single_state_entity_data_

Member Typedef Documentation

typedef genetic_algorithm::EntityElementOP protocols::multistate_design::MultiStateEntity::EntityElementOP

typedef genetic_algorithm::Entity::OP protocols::multistate_design::MultiStateEntity::EntityOP

Constructor & Destructor Documentation

protocols::multistate_design::MultiStateEntity::MultiStateEntity

(

)

protocols::multistate_design::MultiStateEntity::MultiStateEntity

(

MultiStateEntity const &

entity

)

protocols::multistate_design::MultiStateEntity::~MultiStateEntity ( )

overridedefault

Member Function Documentation

MultiStateEntity::EntityOP protocols::multistate_design::MultiStateEntity::clone ( ) const

overridevirtual

Reimplemented from protocols::genetic_algorithm::Entity.

bool protocols::multistate_design::MultiStateEntity::read_checkpoint ( std::istream &  is )

overridevirtual

Reimplemented from protocols::genetic_algorithm::Entity.

References protocols::genetic_algorithm::Entity::read_checkpoint(), and single_state_entity_data_.

void protocols::multistate_design::MultiStateEntity::show ( std::ostream &  os ) const

overridevirtual

Reimplemented from protocols::genetic_algorithm::Entity.

References core::chemical::element::F, protocols::genetic_algorithm::Entity::fitness(), single_state_entity_data_, and protocols::genetic_algorithm::Entity::traits().

utility::vector1< SingleStateEntityData > const & protocols::multistate_design::MultiStateEntity::single_state_entity_data

(

)

const

References single_state_entity_data_.

Referenced by protocols::multistate_design::MultiStateFitnessFunction::evaluate(), and protocols::multistate_design::MultiStatePacker::evaluate().

utility::vector1< SingleStateEntityData > & protocols::multistate_design::MultiStateEntity::single_state_entity_data

(

)

References single_state_entity_data_.

void protocols::multistate_design::MultiStateEntity::write_checkpoint ( std::ostream &  os ) const

overridevirtual

Reimplemented from protocols::genetic_algorithm::Entity.

References single_state_entity_data_, and protocols::genetic_algorithm::Entity::write_checkpoint().

Member Data Documentation

utility::vector1< SingleStateEntityData > protocols::multistate_design::MultiStateEntity::single_state_entity_data_

private

Referenced by read_checkpoint(), show(), single_state_entity_data(), and write_checkpoint().

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The documentation for this class was generated from the following files:

• src/protocols/multistate_design/MultiStateEntity.hh
• src/protocols/multistate_design/MultiStateEntity.cc