| AtomICoor() | core::chemical::AtomICoor | |
| AtomICoor(std::string const &built_atom_name, Real const phi_in, Real const theta_in, Real const d_in, std::string const &stub_atom1_name, std::string const &stub_atom2_name, std::string const &stub_atom3_name, ResidueType const &rsd_type) | core::chemical::AtomICoor | |
| AtomICoor(std::string const &built_atom_name, Real const phi_in, Real const theta_in, Real const d_in, ICoorAtomID const &stub_atom1, ICoorAtomID const &stub_atom2, ICoorAtomID const &stub_atom3, ResidueType const &rsd_type) | core::chemical::AtomICoor | |
| build(conformation::Residue const &rsd, conformation::Conformation const &conformation) const | core::chemical::AtomICoor | |
| build(ResidueType const &rsd_type) const | core::chemical::AtomICoor | |
| build(conformation::Residue const &rsd) const | core::chemical::AtomICoor | |
| build(Vector v1, Vector v2, Vector v3) const | core::chemical::AtomICoor | private |
| built_atom() const | core::chemical::AtomICoor | inline |
| built_atom_ | core::chemical::AtomICoor | private |
| d() const | core::chemical::AtomICoor | inline |
| d_ | core::chemical::AtomICoor | private |
| depends_on_a_true_index(utility::vector1< bool > const &atomvect) const | core::chemical::AtomICoor | inline |
| depends_on_polymer_lower() const | core::chemical::AtomICoor | inline |
| depends_on_polymer_upper() const | core::chemical::AtomICoor | inline |
| depends_on_residue_connection(Size const connid) const | core::chemical::AtomICoor | inline |
| depends_on_residue_connection() const | core::chemical::AtomICoor | inline |
| is_internal() const | core::chemical::AtomICoor | inline |
| phi() const | core::chemical::AtomICoor | inline |
| phi_ | core::chemical::AtomICoor | private |
| show(std::ostream &) const | core::chemical::AtomICoor | |
| stub_atom(int const atm) | core::chemical::AtomICoor | inline |
| stub_atom(int const atm) const | core::chemical::AtomICoor | inline |
| stub_atom1() const | core::chemical::AtomICoor | inline |
| stub_atom1_ | core::chemical::AtomICoor | private |
| stub_atom2() const | core::chemical::AtomICoor | inline |
| stub_atom2_ | core::chemical::AtomICoor | private |
| stub_atom3() const | core::chemical::AtomICoor | inline |
| stub_atom3_ | core::chemical::AtomICoor | private |
| theta() const | core::chemical::AtomICoor | inline |
| theta_ | core::chemical::AtomICoor | private |