protocols::match::output::WriteKinemageOutputter Class Reference

#include <WriteKinemageOutputter.hh>

Inheritance diagram for protocols::match::output::WriteKinemageOutputter:

Public Member Functions
	~WriteKinemageOutputter () override
void	record_match (match const &m, MatchEvaluatorOP evaluator, MatchScoreWriterOP match_score_writer) override
void	record_match (match_dspos1 const &m) override
	evaluator and score writer are not passed in because single-downstream-position match currently have no way of being evaluated More...
void	set_coordinate_cacher (UpstreamHitCacherOP)
void	set_n_geomcst (core::Size n_geomcst)
void	set_kin_writer (WriteUpstreamHitKinemageOP us_writer)
void	set_downstream_writer (core::Size geomcst_id, DownstreamCoordinateKinemageWriterOP ds_writer)
Public Member Functions inherited from protocols::match::output::OutputWriter
	OutputWriter ()
	~OutputWriter () override
protocols::toolbox::match_enzdes_util::EnzConstraintIOCOP	cst_io () const
void	determine_redundant_upstream_matchres (match_dspos1 const &m, std::map< core::Size, core::Size > &redundant_upstream_res) const
	determine if any upstream res are at the same scaffold position, i.e. if one of them is a backbone interaction the redundant_upstream_res map is a mapping from the redundant geometric constraint id of the redundant residue to the geomcst_id of the "nonredundant" res i.e. if cstres 1 happens to be a cys at position 10 and cstres 3 is a gly at position 10 (and it's backbone is used in satisfying constraint 3), the mapping will contain the 3,1 pair. More...
virtual void	prepare_for_output_writing ()
virtual void	end_output_writing ()
virtual void	initialize_from_matcher_task (MatcherTaskCOP mtask)

Private Attributes
UpstreamHitCacherOP	coordinate_cacher_
WriteUpstreamHitKinemageOP	upstream_kin_writer_
utility::vector1 < DownstreamCoordinateKinemageWriterOP >	dswriters_

Constructor & Destructor Documentation

protocols::match::output::WriteKinemageOutputter::~WriteKinemageOutputter ( )

overridedefault

Member Function Documentation

void protocols::match::output::WriteKinemageOutputter::record_match ( match const &  m, MatchEvaluatorOP  evaluator, MatchScoreWriterOP  match_score_writer  )

overridevirtual

Implements protocols::match::output::OutputWriter.

References coordinate_cacher_, dswriters_, and upstream_kin_writer_.

void protocols::match::output::WriteKinemageOutputter::record_match ( match_dspos1 const &  m )

overridevirtual

evaluator and score writer are not passed in because single-downstream-position match currently have no way of being evaluated

Implements protocols::match::output::OutputWriter.

References coordinate_cacher_, dswriters_, protocols::match::fake_hit(), protocols::match::full_hit(), protocols::match::match_dspos1::originating_geom_cst_for_dspos, protocols::match::match_dspos1::upstream_hits, and upstream_kin_writer_.

void protocols::match::output::WriteKinemageOutputter::set_coordinate_cacher

(

UpstreamHitCacherOP

cacher

)

References coordinate_cacher_.

void protocols::match::output::WriteKinemageOutputter::set_downstream_writer	(	core::Size	geomcst_id,
		DownstreamCoordinateKinemageWriterOP	ds_writer
	)

References dswriters_.

void protocols::match::output::WriteKinemageOutputter::set_kin_writer

(

WriteUpstreamHitKinemageOP

us_writer

)

References upstream_kin_writer_.

void protocols::match::output::WriteKinemageOutputter::set_n_geomcst

(

core::Size

n_geomcst

)

References dswriters_.

Member Data Documentation

UpstreamHitCacherOP protocols::match::output::WriteKinemageOutputter::coordinate_cacher_

private

Referenced by record_match(), and set_coordinate_cacher().

utility::vector1< DownstreamCoordinateKinemageWriterOP > protocols::match::output::WriteKinemageOutputter::dswriters_

private

Referenced by record_match(), set_downstream_writer(), and set_n_geomcst().

WriteUpstreamHitKinemageOP protocols::match::output::WriteKinemageOutputter::upstream_kin_writer_

private

Referenced by record_match(), and set_kin_writer().

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The documentation for this class was generated from the following files:

• src/protocols/match/output/WriteKinemageOutputter.hh
• src/protocols/match/output/WriteKinemageOutputter.cc