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protocols::dna::DnaInterfaceMultiStateDesign Member List

This is the complete list of members for protocols::dna::DnaInterfaceMultiStateDesign, including all inherited members.

add_dna_states(Pose const &, PackerTaskCOP)protocols::dna::DnaInterfaceMultiStateDesignprivate
anchor_offset_protocols::dna::DnaInterfaceMultiStateDesignprivate
AnnealableGraphBaseCOP typedefprotocols::minimization_packing::PackRotamersMover
AnnealableGraphBaseOP typedefprotocols::minimization_packing::PackRotamersMover
apply(Pose &) overrideprotocols::dna::DnaInterfaceMultiStateDesignvirtual
boltz_temp_protocols::dna::DnaInterfaceMultiStateDesignprivate
checkpoint_gz_protocols::dna::DnaInterfaceMultiStateDesignprivate
checkpoint_interval_protocols::dna::DnaInterfaceMultiStateDesignprivate
checkpoint_prefix_protocols::dna::DnaInterfaceMultiStateDesignprivate
checkpoint_rename_protocols::dna::DnaInterfaceMultiStateDesignprivate
cleanup(core::pose::Pose &pose)protocols::minimization_packing::PackRotamersMoverprotectedvirtual
clear_info()protocols::moves::Moverinlinevirtual
clone() const overrideprotocols::dna::DnaInterfaceMultiStateDesignvirtual
complex_type_generator_for_pack_rotamers_mover(utility::tag::XMLSchemaDefinition &xsd)protocols::minimization_packing::PackRotamersMoverstatic
copy_dna_chains(DnaChainsOP)protocols::dna::DnaInterfaceMultiStateDesign
copy_targeted_dna(DnaDesignDefOPs const &)protocols::dna::DnaInterfaceMultiStateDesign
create()protocols::moves::Movervirtual
dna_chains_protocols::dna::DnaInterfaceMultiStateDesignprivate
DnaInterfaceMultiStateDesign()protocols::dna::DnaInterfaceMultiStateDesign
fraction_by_recombination_protocols::dna::DnaInterfaceMultiStateDesignprivate
fresh_instance() const overrideprotocols::dna::DnaInterfaceMultiStateDesignvirtual
gen_alg_protocols::dna::DnaInterfaceMultiStateDesignprivate
generations_protocols::dna::DnaInterfaceMultiStateDesignprivate
GeneticAlgorithmOP typedefprotocols::dna::DnaInterfaceMultiStateDesign
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const overrideprotocols::dna::DnaInterfaceMultiStateDesignvirtual
get_native_pose() const protocols::moves::Mover
get_self_ptr() const protocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() const protocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_type() const protocols::moves::Moverinline
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
initialize(Pose &)protocols::dna::DnaInterfaceMultiStateDesignprivate
initialize_task_factory_with_operations(std::list< core::pack::task::operation::TaskOperationCOP > const &)protocols::minimization_packing::PackRotamersMover
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
list_options_read(utility::options::OptionKeyList &opts)protocols::minimization_packing::PackRotamersMoverstatic
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
mover_name()protocols::dna::DnaInterfaceMultiStateDesignstatic
multistate_packer_protocols::dna::DnaInterfaceMultiStateDesignprivate
mutate_rate_protocols::dna::DnaInterfaceMultiStateDesignprivate
name()protocols::moves::Moverinlinestatic
nloop(core::Size nloop_in)protocols::minimization_packing::PackRotamersMover
nloop() const protocols::minimization_packing::PackRotamersMoverinline
note_packertask_settings(Pose const &)protocols::minimization_packing::PackRotamersMoverprotectedvirtual
num_packs_protocols::dna::DnaInterfaceMultiStateDesignprivate
numresults_protocols::dna::DnaInterfaceMultiStateDesignprivate
output_results(Pose &)protocols::dna::DnaInterfaceMultiStateDesign
PackerTaskCOP typedefprotocols::dna::DnaInterfaceMultiStateDesign
PackRotamersMover()protocols::minimization_packing::PackRotamersMover
PackRotamersMover(utility::options::OptionCollection const &options)protocols::minimization_packing::PackRotamersMover
PackRotamersMover(std::string const &)protocols::minimization_packing::PackRotamersMover
PackRotamersMover(ScoreFunctionCOP scorefxn, PackerTaskCOP task=nullptr, core::Size nloop=1)protocols::minimization_packing::PackRotamersMover
PackRotamersMover(PackRotamersMover const &other)protocols::minimization_packing::PackRotamersMover
parse_my_tag(TagCOP, basic::datacache::DataMap &) overrideprotocols::dna::DnaInterfaceMultiStateDesignvirtual
parse_score_function(TagCOP, basic::datacache::DataMap const &)protocols::minimization_packing::PackRotamersMovervirtual
parse_task_operations(TagCOP, basic::datacache::DataMap const &)protocols::minimization_packing::PackRotamersMovervirtual
pop_from_ss_protocols::dna::DnaInterfaceMultiStateDesignprivate
pop_size_protocols::dna::DnaInterfaceMultiStateDesignprivate
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
PosType typedefprotocols::dna::DnaInterfaceMultiStateDesign
provide_citation_info(basic::citation_manager::CitationCollectionList &) const protocols::moves::Movervirtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)protocols::dna::DnaInterfaceMultiStateDesignstatic
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
reset_status()protocols::moves::Mover
rotamer_sets() const protocols::minimization_packing::PackRotamersMover
RotamerSetsCOP typedefprotocols::minimization_packing::PackRotamersMover
RotamerSetsOP typedefprotocols::minimization_packing::PackRotamersMover
run()protocols::dna::DnaInterfaceMultiStateDesignprivate
protocols::minimization_packing::PackRotamersMover::run(Pose &pose, utility::vector0< int > rot_to_pack=utility::vector0< int >()) const protocols::minimization_packing::PackRotamersMoverprotectedvirtual
score_function(ScoreFunctionCOP sf)protocols::minimization_packing::PackRotamersMover
score_function() const protocols::minimization_packing::PackRotamersMover
ScoreFunctionCOP typedefprotocols::minimization_packing::PackRotamersMover
set_annealer_observer(core::pack::annealer::AnnealerObserverOP observer)protocols::minimization_packing::PackRotamersMoverinline
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_type(std::string const &setting)protocols::moves::Moverinline
setup(Pose &pose)protocols::minimization_packing::PackRotamersMoverprotectedvirtual
show(std::ostream &output=std::cout) const overrideprotocols::minimization_packing::PackRotamersMovervirtual
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
targeted_dna_protocols::dna::DnaInterfaceMultiStateDesignprivate
task(PackerTaskCOP t)protocols::minimization_packing::PackRotamersMover
task() const protocols::minimization_packing::PackRotamersMover
task_factory(TaskFactoryCOP tf)protocols::minimization_packing::PackRotamersMovervirtual
task_factory() const protocols::minimization_packing::PackRotamersMover
task_is_valid(Pose const &pose) const protocols::minimization_packing::PackRotamersMover
TaskFactoryCOP typedefprotocols::minimization_packing::PackRotamersMover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type(const std::string &type_in)protocols::moves::Moverinline
type() const protocols::moves::Moverinline
~DnaInterfaceMultiStateDesign() overrideprotocols::dna::DnaInterfaceMultiStateDesign
~PackRotamersMover() overrideprotocols::minimization_packing::PackRotamersMover
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