HelicalBundlePredictApplication.cc File Reference

The meat-and-potatoes for the helical_bundle_predict application, used to predict structures of helical bundles made from canonical or noncanonical building-blocks. More...

#include <protocols/helical_bundle_predict/HelicalBundlePredictApplication.hh>
#include <core/types.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/pose/variant_util.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ResidueType.hh>
#include <core/conformation/Residue.hh>
#include <core/id/TorsionID.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/Energies.hh>
#include <core/io/silent/SilentStruct.hh>
#include <core/io/silent/SilentStructFactory.hh>
#include <core/io/silent/SilentFileOptions.hh>
#include <core/util/SwitchResidueTypeSet.hh>
#include <core/import_pose/import_pose.hh>
#include <core/scoring/rms_util.hh>
#include <core/id/AtomID.hh>
#include <core/id/AtomID_Map.hh>
#include <protocols/rosetta_scripts/ParsedProtocol.hh>
#include <protocols/helical_bundle_predict/HBP_MoveGenerator.hh>
#include <protocols/helical_bundle_predict/HBP_HelixCoilMoveGenerator.hh>
#include <protocols/helical_bundle_predict/HBP_FinalFullatomRefinementMoveGenerator.hh>
#include <protocols/helical_bundle_predict/HBP_TemperatureScheduleGenerator.hh>
#include <protocols/helical_bundle_predict/HBP_SigmoidalTemperatureScheduleGenerator.hh>
#include <protocols/cyclic_peptide_predict/HierarchicalHybridJD_JobResultsSummary.hh>
#include <protocols/cyclic_peptide/PeptideStubMover.hh>
#include <basic/Tracer.hh>
#include <basic/options/keys/helical_bundle_predict.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/cyclic_peptide.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <utility/string_util.hh>
#include <utility/pointer/memory.hh>
#include <numeric/random/random.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::helical_bundle_predict

Functions
static basic::Tracer	TR ("protocols.helical_bundle_predict.HelicalBundlePredictApplication")

Detailed Description

The meat-and-potatoes for the helical_bundle_predict application, used to predict structures of helical bundles made from canonical or noncanonical building-blocks.

Author

Vikram K. Mulligan (vmull.nosp@m.igan.nosp@m.@flat.nosp@m.iron.nosp@m.insti.nosp@m.tute.nosp@m..org)

Function Documentation

static basic::Tracer TR ( "protocols.helical_bundle_predict.HelicalBundlePredictApplication"  )

static