core::scoring::constraints::SequenceProfileConstraint Member List

This is the complete list of members for core::scoring::constraints::SequenceProfileConstraint, including all inherited members.

atom(core::Size const ) const override	core::scoring::constraints::SequenceProfileConstraint	inlinevirtual
AtomID typedef	core::scoring::constraints::Constraint
choose_effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &sp, numeric::random::RandomGenerator &)	core::scoring::constraints::Constraint	virtual
clone() const override	core::scoring::constraints::SequenceProfileConstraint	virtual
core::scoring::constraints::Constraint::clone(func::FuncOP) const	core::scoring::constraints::Constraint	virtual
Conformation typedef	core::scoring::constraints::SequenceProfileConstraint
Constraint(ScoreType const &t)	core::scoring::constraints::Constraint
ConstraintOP typedef	core::scoring::constraints::SequenceProfileConstraint
dist(core::chemical::AA aa) const	core::scoring::constraints::SequenceProfileConstraint
dist(core::scoring::func::XYZ_Func const &xyz) const override	core::scoring::constraints::SequenceProfileConstraint	virtual
core::scoring::constraints::Constraint::dist(core::pose::Pose const &) const	core::scoring::constraints::Constraint	virtual
effective_sequence_separation(core::kinematics::ShortestPathInFoldTree const &) const	core::scoring::constraints::Constraint	virtual
EnergyMap typedef	core::scoring::constraints::SequenceProfileConstraint
fill_f1_f2(AtomID const &, XYZ_Func const &, core::Vector &, core::Vector &, EnergyMap const &) const override	core::scoring::constraints::SequenceProfileConstraint
core::scoring::constraints::Constraint::fill_f1_f2(AtomID const &atom, core::scoring::func::XYZ_Func const &xyz_func, Vector &F1, Vector &F2, EnergyMap const &weights) const =0	core::scoring::constraints::Constraint	pure virtual
FuncFactory typedef	core::scoring::constraints::SequenceProfileConstraint
get_func() const	core::scoring::constraints::Constraint	virtual
mapping_	core::scoring::constraints::SequenceProfileConstraint	private
natoms() const override	core::scoring::constraints::SequenceProfileConstraint	inlinevirtual
operator!=(Constraint const &other) const	core::scoring::constraints::Constraint
operator==(Constraint const &) const override	core::scoring::constraints::SequenceProfileConstraint	virtual
Pose typedef	core::scoring::constraints::SequenceProfileConstraint
profile_mapping() const	core::scoring::constraints::SequenceProfileConstraint
read_constraint(std::istream &, core::pose::Pose const &)	core::scoring::constraints::Constraint	virtual
read_data(std::istream &)	core::scoring::constraints::Constraint	virtual
read_def(std::istream &, Pose const &, func::FuncFactory const &) override	core::scoring::constraints::SequenceProfileConstraint	virtual
remap_resid(SequenceMapping const &) const override	core::scoring::constraints::SequenceProfileConstraint	virtual
remapped_clone(pose::Pose const &src, pose::Pose const &dest, id::SequenceMappingCOP map) const override	core::scoring::constraints::SequenceProfileConstraint	virtual
residues() const override	core::scoring::constraints::SequenceProfileConstraint	virtual
same_type_as_me(Constraint const &) const override	core::scoring::constraints::SequenceProfileConstraint	virtual
score(XYZ_Func const &, EnergyMap const &, EnergyMap &) const override	core::scoring::constraints::SequenceProfileConstraint	virtual
core::scoring::constraints::Constraint::score(pose::Pose const &pose) const	core::scoring::constraints::Constraint	virtual
core::scoring::constraints::Constraint::score(pose::Pose const &pose, EnergyMap const &weights) const	core::scoring::constraints::Constraint	virtual
score_type() const	core::scoring::constraints::Constraint	inline
seqpos() const	core::scoring::constraints::SequenceProfileConstraint	inline
seqpos(core::Size seqpos)	core::scoring::constraints::SequenceProfileConstraint	inline
seqpos_	core::scoring::constraints::SequenceProfileConstraint	private
sequence_profile() const	core::scoring::constraints::SequenceProfileConstraint
sequence_profile_	core::scoring::constraints::SequenceProfileConstraint	private
SequenceMapping typedef	core::scoring::constraints::SequenceProfileConstraint
SequenceProfile typedef	core::scoring::constraints::SequenceProfileConstraint
SequenceProfileConstraint()	core::scoring::constraints::SequenceProfileConstraint
SequenceProfileConstraint(Pose const &, core::Size, SequenceProfileCOP profile=nullptr, core::id::SequenceMappingCOP mapping=nullptr)	core::scoring::constraints::SequenceProfileConstraint
SequenceProfileConstraint(core::Size, SequenceProfileCOP profile=nullptr, core::id::SequenceMappingCOP mapping=nullptr)	core::scoring::constraints::SequenceProfileConstraint
SequenceProfileConstraint(SequenceProfileConstraint const &src)	core::scoring::constraints::SequenceProfileConstraint	protected
SequenceProfileCOP typedef	core::scoring::constraints::SequenceProfileConstraint
set_sequence_profile(SequenceProfileCOP profile, core::id::SequenceMappingCOP mapping=nullptr)	core::scoring::constraints::SequenceProfileConstraint
setup_for_derivatives(core::scoring::func::XYZ_Func const &, ScoreFunction const &) const	core::scoring::constraints::Constraint	virtual
setup_for_scoring(core::scoring::func::XYZ_Func const &, ScoreFunction const &) const	core::scoring::constraints::Constraint	virtual
show(std::ostream &out) const override	core::scoring::constraints::SequenceProfileConstraint	virtual
show_def(std::ostream &, Pose const &) const override	core::scoring::constraints::SequenceProfileConstraint	virtual
show_violations(std::ostream &out, pose::Pose const &, Size, Real threshold=1) const	core::scoring::constraints::Constraint	virtual
steal_def(pose::Pose const &)	core::scoring::constraints::Constraint	virtual
to_string() const	core::scoring::constraints::Constraint
type() const override	core::scoring::constraints::SequenceProfileConstraint	inlinevirtual
weight(core::Real const w)	core::scoring::constraints::SequenceProfileConstraint
weight() const	core::scoring::constraints::SequenceProfileConstraint
weight_	core::scoring::constraints::SequenceProfileConstraint	private
XYZ_Func typedef	core::scoring::constraints::SequenceProfileConstraint
~Constraint() override	core::scoring::constraints::Constraint
~SequenceProfileConstraint() override	core::scoring::constraints::SequenceProfileConstraint