core::scoring::mhc_epitope_energy::MHCEpitopePredictorSVM Class Reference

#include <MHCEpitopePredictorSVM.hh>

Inheritance diagram for core::scoring::mhc_epitope_energy::MHCEpitopePredictorSVM:

Public Member Functions
	MHCEpitopePredictorSVM (core::scoring::methods::NMerSVMEnergyOP)
	MHCEpitopePredictorSVM constructor, taking a NMerSVMEnergyOP configured with scoring options. More...
bool	operator== (MHCEpitopePredictor const &) override
	Is it the same predictor, not just as initialized (e.g., from file), but considering any subsequent modifications? More...
std::string	report () const override
	Get a summary of the data stored in this object. More...
core::Real	score (std::string const &pep) override
	Scores a peptide. More...
core::scoring::methods::NMerSVMEnergyOP	get_svm () const
	Accessor for the svm_ (NMerSVMEnergy object) being used by the Predictor for scoring. More...
Public Member Functions inherited from core::scoring::mhc_epitope_energy::MHCEpitopePredictor
	MHCEpitopePredictor ()
	~MHCEpitopePredictor () override
core::Size	get_peptide_length () const
	The length required by this predictor for peptides. More...
core::Size	get_overhang_length () const

Private Attributes
core::scoring::methods::NMerSVMEnergyOP	svm_

Additional Inherited Members
Protected Member Functions inherited from core::scoring::mhc_epitope_energy::MHCEpitopePredictor
void	set_peptide_length (core::Size peptide_length)
	Setter for peptide_length, for derived classes to set upon initialization. More...
void	set_overhang_length (core::Size overhang_length)
	Setter for peptide_length, for derived classes to set upon initialization. More...

Constructor & Destructor Documentation

core::scoring::mhc_epitope_energy::MHCEpitopePredictorSVM::MHCEpitopePredictorSVM

(

core::scoring::methods::NMerSVMEnergyOP

svm

)

MHCEpitopePredictorSVM constructor, taking a NMerSVMEnergyOP configured with scoring options.

References core::scoring::mhc_epitope_energy::MHCEpitopePredictor::set_overhang_length(), and core::scoring::mhc_epitope_energy::MHCEpitopePredictor::set_peptide_length().

Member Function Documentation

core::scoring::methods::NMerSVMEnergyOP core::scoring::mhc_epitope_energy::MHCEpitopePredictorSVM::get_svm ( ) const

inline

Accessor for the svm_ (NMerSVMEnergy object) being used by the Predictor for scoring.

References svm_.

Referenced by report().

bool core::scoring::mhc_epitope_energy::MHCEpitopePredictorSVM::operator== ( MHCEpitopePredictor const &  )

overridevirtual

Is it the same predictor, not just as initialized (e.g., from file), but considering any subsequent modifications?

Takes any other epitope predictor so needs to make sure same type.

Implements core::scoring::mhc_epitope_energy::MHCEpitopePredictor.

References core::scoring::mhc_epitope_energy::MHCEpitopePredictor::get_overhang_length(), core::scoring::mhc_epitope_energy::MHCEpitopePredictor::get_peptide_length(), and svm_.

std::string core::scoring::mhc_epitope_energy::MHCEpitopePredictorSVM::report ( ) const

overridevirtual

Get a summary of the data stored in this object.

Reimplemented from core::scoring::mhc_epitope_energy::MHCEpitopePredictor.

References core::scoring::mhc_epitope_energy::MHCEpitopePredictor::get_peptide_length(), and get_svm().

core::Real core::scoring::mhc_epitope_energy::MHCEpitopePredictorSVM::score ( std::string const &  pep )

overridevirtual

Scores a peptide.

Reimplemented from core::scoring::mhc_epitope_energy::MHCEpitopePredictor.

References svm_.

Member Data Documentation

core::scoring::methods::NMerSVMEnergyOP core::scoring::mhc_epitope_energy::MHCEpitopePredictorSVM::svm_

private

Referenced by get_svm(), operator==(), and score().

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The documentation for this class was generated from the following files:

• src/core/scoring/mhc_epitope_energy/MHCEpitopePredictorSVM.hh
• src/core/scoring/mhc_epitope_energy/MHCEpitopePredictorSVM.cc