protocols::match::downstream::SecondaryMatcherToUpstreamResidue Member List

This is the complete list of members for protocols::match::downstream::SecondaryMatcherToUpstreamResidue, including all inherited members.

active_site_grid() const	protocols::match::downstream::DownstreamAlgorithm	inlineprotected
active_site_grid_set() const	protocols::match::downstream::DownstreamAlgorithm	inlineprotected
add_evaluator_for_target_restype(core::chemical::ResidueTypeCOP target_restype, SecMatchResiduePairEvaluatorCOP evaluator, core::Size mcfi_id_for_evaluator)	protocols::match::downstream::SecondaryMatcherToUpstreamResidue
add_target_restype(core::chemical::ResidueTypeCOP target_restype)	protocols::match::downstream::SecondaryMatcherToUpstreamResidue
are_colliding(core::conformation::Residue const &us_res, core::conformation::Residue const &ds_res, utility::vector1< core::id::AtomID > const &ds_atoms, utility::vector1< core::Size > const &catalytic_atoms) const	protocols::match::downstream::DownstreamAlgorithm
bbgrid() const	protocols::match::downstream::DownstreamAlgorithm	inlineprotected
build(core::Size const scaffold_build_point_id, core::Size const upstream_conf_id, core::conformation::Residue const &upstream_residue) const override	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	virtual
build_hits_at_all_positions(Matcher &matcher) override	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	virtual
clone() const override	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	virtual
count_rotamer(core::conformation::Residue const &upstream_conformation)	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	private
count_rotamer_for_lastseen_restype_	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	private
count_rotamers_per_target_restype_	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	private
default_build_hits_at_all_positions(Matcher const &matcher) const	protocols::match::downstream::DownstreamAlgorithm	protected
DownstreamAlgorithm(core::Size geom_cst_id)	protocols::match::downstream::DownstreamAlgorithm
DownstreamAlgorithm(DownstreamAlgorithm const &)	protocols::match::downstream::DownstreamAlgorithm
Evaluator_MCFI_ID_Pair typedef	protocols::match::downstream::SecondaryMatcherToUpstreamResidue
EvaluatorSet typedef	protocols::match::downstream::SecondaryMatcherToUpstreamResidue
generates_primary_hits() const override	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	virtual
geom_cst_id() const	protocols::match::downstream::DownstreamAlgorithm
get_dsbuilder() const	protocols::match::downstream::DownstreamAlgorithm
hits_to_include_with_partial_match(match_dspos1 const &m) const override	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	virtual
last_seen_restype_	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	private
last_seen_restype_index_	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	private
my_hits_for_target_hit_map_	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	private
n_possible_hits_per_upstream_conformation() const override	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	virtual
n_rotamers_per_target_restype_	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	private
n_viable_target_hits_since_last_pruning_	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	private
operator=(DownstreamAlgorithm const &)	protocols::match::downstream::DownstreamAlgorithm
parent typedef	protocols::match::downstream::SecondaryMatcherToUpstreamResidue
prepare_for_hit_generation(Matcher &matcher)	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	private
prepare_for_hit_generation_at_target_build_point(Matcher &matcher, upstream::ScaffoldBuildPoint const &target_build_point)	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	private
prepare_for_match_enumeration(Matcher const &matcher) override	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	virtual
process_hit(Hit const &hit, core::conformation::Residue const &upstream_conformation)	protocols::match::downstream::SecondaryMatcherToUpstreamResidue
reorder_restypes(upstream::UpstreamBuilder const &builder)	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	private
respair_evaluators_	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	private
respond_to_peripheral_hitlist_change(Matcher &matcher) override	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	virtual
respond_to_primary_hitlist_change(Matcher &matcher, core::Size round_just_completed) override	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	virtual
SecondaryMatcherToUpstreamResidue(core::Size geom_cst_id)	protocols::match::downstream::SecondaryMatcherToUpstreamResidue
set_active_site_grid(ActiveSiteGridCOP active_site_grid)	protocols::match::downstream::DownstreamAlgorithm
set_bb_grid(BumpGridCOP bbgrid)	protocols::match::downstream::DownstreamAlgorithm
set_dsbuilder(DownstreamBuilderOP dsbuilder)	protocols::match::downstream::DownstreamAlgorithm
set_target_geomcst_id(core::Size target_geomcst_id)	protocols::match::downstream::SecondaryMatcherToUpstreamResidue
set_target_rotamer_coords(TargetRotamerCoordsOP target_geomcst_coords)	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	private
Size typedef	protocols::match::downstream::DownstreamAlgorithm
Size2 typedef	protocols::match::downstream::SecondaryMatcherToUpstreamResidue
Size2Tuple typedef	protocols::match::downstream::SecondaryMatcherToUpstreamResidue
smUR_pose_build_resids_	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	private
store_rotamer_coords(Hit const &hit, core::conformation::Residue const &upstream_conformation)	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	private
target_geomcst_coords_	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	private
target_geomcst_id_	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	private
target_hits_end_	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	private
target_hits_for_focused_build_point_begin_	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	private
target_hits_for_focused_build_point_end_	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	private
target_restype_index_map_	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	private
target_restypes_	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	private
upstream_only() const override	protocols::match::downstream::SecondaryMatcherToUpstreamResidue	virtual
Vector typedef	protocols::match::downstream::DownstreamAlgorithm
~DownstreamAlgorithm() override	protocols::match::downstream::DownstreamAlgorithm
~SecondaryMatcherToUpstreamResidue() override	protocols::match::downstream::SecondaryMatcherToUpstreamResidue