protocols::antibody::snugdock::SnugDock Member List

This is the complete list of members for protocols::antibody::snugdock::SnugDock, including all inherited members.

ab_has_light_chain_	protocols::antibody::snugdock::SnugDock	private
add_additional_task_operaration(core::pack::task::operation::TaskOperationOP task_operation)	protocols::docking::DockingHighRes
antibody_info_	protocols::antibody::snugdock::SnugDock	private
apply(Pose &) override	protocols::antibody::snugdock::SnugDock	virtual
CDR_loops_	protocols::antibody::snugdock::SnugDock	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const override	protocols::antibody::snugdock::SnugDock	virtual
create()	protocols::moves::Mover	virtual
debug()	protocols::antibody::snugdock::SnugDock
debug_	protocols::antibody::snugdock::SnugDock	private
DockingHighRes()	protocols::docking::DockingHighRes
DockingHighRes(core::Size const rb_jump)	protocols::docking::DockingHighRes
DockingHighRes(core::Size const rb_jump, core::scoring::ScoreFunctionOP scorefxn)	protocols::docking::DockingHighRes
DockingHighRes(core::Size const rb_jump, core::scoring::ScoreFunctionOP scorefxn, core::scoring::ScoreFunctionOP scorefxn_pack)	protocols::docking::DockingHighRes
DockingHighRes(DockJumps const movable_jumps, core::scoring::ScoreFunctionOP scorefxn, core::scoring::ScoreFunctionOP scorefxn_pack)	protocols::docking::DockingHighRes
DockingHighRes(DockingHighRes const &old_instance)	protocols::docking::DockingHighRes
fresh_instance() const override	protocols::antibody::snugdock::SnugDock	virtual
get_additional_output()	protocols::moves::Mover	virtual
get_additional_task_operarations()	protocols::docking::DockingHighRes
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const override	protocols::antibody::snugdock::SnugDock	virtual
get_native_pose() const	protocols::moves::Mover
get_partners() const	protocols::docking::DockingHighRes	inline
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_type() const	protocols::moves::Mover	inline
high_res_kink_constraint() const	protocols::antibody::snugdock::SnugDock	inline
high_res_kink_constraint(bool const setting)	protocols::antibody::snugdock::SnugDock	inline
high_res_kink_constraint_	protocols::antibody::snugdock::SnugDock	private
high_resolution_step_	protocols::antibody::snugdock::SnugDock	private
ignore_default_task()	protocols::docking::DockingHighRes
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
init()	protocols::antibody::snugdock::SnugDock	private
init_for_equal_operator_and_copy_constructor(SnugDock &lhs, SnugDock const &rhs)	protocols::antibody::snugdock::SnugDock	private
init_from_options()	protocols::antibody::snugdock::SnugDock	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
mc_	protocols::antibody::snugdock::SnugDock	private
movable_jumps()	protocols::docking::DockingHighRes	inline
movable_jumps() const	protocols::docking::DockingHighRes	inline
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
mover_name()	protocols::antibody::snugdock::SnugDock	static
name()	protocols::moves::Mover	inlinestatic
number_of_high_resolution_cycles() const	protocols::antibody::snugdock::SnugDock
number_of_high_resolution_cycles(core::Size const number_of_high_resolution_cycles)	protocols::antibody::snugdock::SnugDock
number_of_high_resolution_cycles_	protocols::antibody::snugdock::SnugDock	private
operator<<(std::ostream &out, SnugDock const &snugdock)	protocols::antibody::snugdock::SnugDock	friend
operator=(SnugDock const &rhs)	protocols::antibody::snugdock::SnugDock
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data)	protocols::moves::Mover	virtual
partners()	protocols::docking::DockingHighRes	inline
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
pre_minimization_	protocols::antibody::snugdock::SnugDock	private
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::moves::Mover	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::antibody::snugdock::SnugDock	static
refine_loop() const	protocols::antibody::snugdock::SnugDock	private
register_options()	protocols::antibody::snugdock::SnugDock	static
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const override	protocols::antibody::snugdock::SnugDock	virtual
reset_status()	protocols::moves::Mover
rt_min()	protocols::docking::DockingHighRes	inline
sc_min()	protocols::docking::DockingHighRes	inline
scorefxn() const	protocols::docking::DockingHighRes
scorefxn_pack() const	protocols::docking::DockingHighRes
set_ab_has_light_chain(bool ab_has_light_chain)	protocols::antibody::snugdock::SnugDock
set_additional_task_operarations(utility::vector1< core::pack::task::operation::TaskOperationOP > additional_task_operations)	protocols::docking::DockingHighRes
set_antibody_info(AntibodyInfoOP antibody_info)	protocols::antibody::snugdock::SnugDock
set_CDR_loops(std::map< protocols::antibody::CDRNameEnum, loops::Loop > cdr_loops)	protocols::antibody::snugdock::SnugDock
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_default()	protocols::antibody::snugdock::SnugDock	private
set_ignore_default_task(bool ignore_default_task)	protocols::docking::DockingHighRes
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_interface_definition_task_operation(protocols::simple_task_operations::InterfaceTaskOperationOP interface_definition)	protocols::docking::DockingHighRes
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_movable_jumps(DockJumps movable_jumps)	protocols::docking::DockingHighRes	inline
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_partners(std::string partners)	protocols::docking::DockingHighRes	inline
set_rt_min(bool rt_min)	protocols::docking::DockingHighRes	inline
set_sc_min(bool sc_min)	protocols::docking::DockingHighRes	inline
set_scorefxn(core::scoring::ScoreFunctionOP scorefxn)	protocols::docking::DockingHighRes
set_scorefxn_pack(core::scoring::ScoreFunctionOP scorefxn_pack)	protocols::docking::DockingHighRes
set_task_factory(core::pack::task::TaskFactoryCOP tf)	protocols::antibody::snugdock::SnugDock
set_type(std::string const &setting)	protocols::moves::Mover	inline
set_vh_vl_jump(bool vh_vl_jump)	protocols::antibody::snugdock::SnugDock
setup_objects(Pose const &pose)	protocols::antibody::snugdock::SnugDock	private
show(std::ostream &out=std::cout) const override	protocols::antibody::snugdock::SnugDock	virtual
SnugDock()	protocols::antibody::snugdock::SnugDock
SnugDock(SnugDock const &rhs)	protocols::antibody::snugdock::SnugDock
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
task_factory()	protocols::docking::DockingHighRes
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
tf2()	protocols::docking::DockingHighRes	protected
tf_	protocols::antibody::snugdock::SnugDock	private
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
vh_vl_jump_	protocols::antibody::snugdock::SnugDock	private
~DockingHighRes() override	protocols::docking::DockingHighRes
~SnugDock() override	protocols::antibody::snugdock::SnugDock