protocols::simple_filters::AbinitioBaseFilter Class Reference

#include <AbinitioBaseFilter.hh>

Inheritance diagram for protocols::simple_filters::AbinitioBaseFilter:

Public Member Functions
	AbinitioBaseFilter ()
	c-tor and d-tor More...
	~AbinitioBaseFilter () override=default
filters::FilterOP	clone () const override=0
filters::FilterOP	fresh_instance () const override=0
bool	apply (core::pose::Pose const &pose) const override=0
	Returns true if the given pose passes the filter, false otherwise. More...
std::string	get_protein_sstype (core::pose::Pose const &pose) const
std::string	name () const override
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
	~Filter () override
virtual void	report (std::ostream &, core::pose::Pose const &) const
virtual core::Real	report_sm (core::pose::Pose const &) const
	used to report filter internals through a score or silent file More...
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	parse_my_tag (utility::tag::TagCOP, basic::datacache::DataMap &)
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
virtual core::Real	score (core::pose::Pose &pose)
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Protected Attributes
int	max_helix_length_
core::Real	max_helix_fraction_
int	beta_
float	beta_ratio_
std::string	sstype_
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

protocols::simple_filters::AbinitioBaseFilter::AbinitioBaseFilter

(

)

c-tor and d-tor

protocols::simple_filters::AbinitioBaseFilter::~AbinitioBaseFilter ( )

overridedefault

Member Function Documentation

bool protocols::simple_filters::AbinitioBaseFilter::apply ( core::pose::Pose const &  pose ) const

overridepure virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

Implemented in protocols::simple_filters::SheetFilter, protocols::simple_filters::COFilter, and protocols::simple_filters::RGFilter.

References tr().

Referenced by protocols::simple_filters::COFilter::apply(), and protocols::simple_filters::RGFilter::apply().

filters::FilterOP protocols::simple_filters::AbinitioBaseFilter::clone ( ) const

overridepure virtual

Implements protocols::filters::Filter.

Implemented in protocols::simple_filters::SheetFilter, protocols::simple_filters::COFilter, and protocols::simple_filters::RGFilter.

filters::FilterOP protocols::simple_filters::AbinitioBaseFilter::fresh_instance ( ) const

overridepure virtual

Implements protocols::filters::Filter.

Implemented in protocols::simple_filters::SheetFilter, protocols::simple_filters::COFilter, and protocols::simple_filters::RGFilter.

std::string protocols::simple_filters::AbinitioBaseFilter::get_protein_sstype

(

core::pose::Pose const &

pose

)

const

References core::chemical::element::F, core::chemical::element::I, core::conformation::Residue::is_protein(), core::pose::read_psipred_ss2_file(), core::pose::Pose::residue(), core::pose::Pose::size(), and tr().

std::string protocols::simple_filters::AbinitioBaseFilter::name ( ) const

inlineoverridevirtual

Reimplemented from protocols::filters::Filter.

Reimplemented in protocols::simple_filters::SheetFilter, protocols::simple_filters::COFilter, and protocols::simple_filters::RGFilter.

Member Data Documentation

int protocols::simple_filters::AbinitioBaseFilter::beta_

mutableprotected

float protocols::simple_filters::AbinitioBaseFilter::beta_ratio_

mutableprotected

core::Real protocols::simple_filters::AbinitioBaseFilter::max_helix_fraction_

mutableprotected

Referenced by protocols::simple_filters::RGFilter::apply().

int protocols::simple_filters::AbinitioBaseFilter::max_helix_length_

mutableprotected

Referenced by protocols::simple_filters::RGFilter::apply().

std::string protocols::simple_filters::AbinitioBaseFilter::sstype_

mutableprotected

Referenced by protocols::simple_filters::COFilter::apply(), and protocols::simple_filters::RGFilter::apply().

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The documentation for this class was generated from the following files:

• src/protocols/simple_filters/AbinitioBaseFilter.hh
• src/protocols/simple_filters/AbinitioBaseFilter.cc