DNA_DihedralPotential.cc File Reference

dna scoring More...

#include <core/scoring/dna/DNA_DihedralPotential.hh>
#include <core/scoring/dna/base_geometry.hh>
#include <core/scoring/ScoringManager.hh>
#include <core/types.hh>
#include <basic/Tracer.hh>
#include <basic/basic.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/ResidueType.hh>
#include <core/kinematics/Stub.hh>
#include <core/pose/Pose.hh>
#include <basic/database/open.hh>
#include <basic/options/option.hh>
#include <basic/options/util.hh>
#include <basic/options/keys/dna.OptionKeys.gen.hh>
#include <utility/vector1.hh>
#include <utility/vector0.hh>
#include <utility/tools/make_vector1.hh>
#include <utility/io/izstream.hh>
#include <numeric/conversions.hh>
#include <numeric/xyzVector.hh>
#include <numeric/xyzMatrix.hh>
#include <numeric/xyz.functions.hh>
#include <ObjexxFCL/format.hh>

Namespaces
	core
	A class for reading in the atom type properties.
	core::scoring
	core::scoring::dna

Functions
static basic::Tracer	core::scoring::dna::TR ("core.scoring.dna.DNA_DihedralPotential")
Size	core::scoring::dna::get_iname1_from_name1 (char const name1)
	iname1 goes from 1-4 : acgt More...
void	core::scoring::dna::put_angle_in_0to360 (Real &angle)
Real	core::scoring::dna::get_triple_bin (Real angle)
Real	core::scoring::dna::get_b1b2_bin (Real epsilon, Real zeta)
Real	core::scoring::dna::get_b1b2_weight (Real epsilon, Real zeta)
Real	core::scoring::dna::get_db1b2_weight_deps (Real epsilon, Real zeta)
void	core::scoring::dna::get_mean_median_and_sdev (vector1< Real > vals, Real &mean, Real &median, Real &sdev)
void	core::scoring::dna::filter_torsions_by_iname (Size const iname, vector1< Size > const &torsion_inames, vector1< Real > &torsions)

Detailed Description

dna scoring

Author

Phil Bradley