| cache_ | protocols::frag_picker::scores::ProfileScoreStructL1 | protected |
| cached_score(FragmentCandidateOP, FragmentScoreMapOP) override | protocols::frag_picker::scores::ProfileScoreStructL1 | virtual |
| cached_scores_id_ | protocols::frag_picker::scores::ProfileScoreStructL1 | private |
| CachingScoringMethod(core::Size priority, core::Real lowest_acceptable_value, bool use_lowest, std::string name) | protocols::frag_picker::scores::CachingScoringMethod | inline |
| clean_up() override | protocols::frag_picker::scores::ProfileScoreStructL1 | inlinevirtual |
| clear() | protocols::frag_picker::scores::ProfileScoreStructL1 | private |
| do_caching(VallChunkOP) override | protocols::frag_picker::scores::ProfileScoreStructL1 | virtual |
| do_caching_simple(VallChunkOP) | protocols::frag_picker::scores::ProfileScoreStructL1 | |
| FragmentScoringMethod(core::Size priority, core::Real lowest_acceptable_value, bool use_lowest, std::string name) | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_id() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_min_allowed_score() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_priority() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_score_name() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| get_use_lowest() | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| id_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| lowest_acceptable_value_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| name_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| priority_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| ProfileScoreStructL1(core::Size, core::Real, bool, core::sequence::SequenceProfileOP, utility::vector1< core::Size > &, core::Size) | protocols::frag_picker::scores::ProfileScoreStructL1 | |
| query_profile_ | protocols::frag_picker::scores::ProfileScoreStructL1 | private |
| score(FragmentCandidateOP, FragmentScoreMapOP) override | protocols::frag_picker::scores::ProfileScoreStructL1 | virtual |
| scores_ | protocols::frag_picker::scores::ProfileScoreStructL1 | protected |
| set_id(core::Size id) | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| set_min_allowed_score(core::Real lowest_acceptable_value) | protocols::frag_picker::scores::FragmentScoringMethod | inline |
| use_lowest_ | protocols::frag_picker::scores::FragmentScoringMethod | protected |
| ~ProfileScoreStructL1() override | protocols::frag_picker::scores::ProfileScoreStructL1 | |