protocols::jd3::pose_outputters Namespace Reference

Classes
class	DeNovoSilentFilePoseOutputter
	The DeNovoSilentFilePoseOutputter. More...
class	DeNovoSilentFilePoseOutputterCreator
class	mmTFPoseOutputSpecification
	The mmTFPoseOutputSpecification giving all of the details of how to write a Pose out to disk in PDB format. More...
class	mmTFPoseOutputter
	The mmTFPoseOutputter. More...
class	mmTFPoseOutputterCreator
class	PDBPoseOutputSpecification
	The PDBPoseOutputSpecification giving all of the details of how to write a Pose out to disk in PDB format. More...
class	PDBPoseOutputter
	The PDBPoseOutputter. More...
class	PDBPoseOutputterCreator
class	PoseOutputSpecification
	The PoseOutputSpecification. More...
class	PoseOutputter
	The PoseOutputter. More...
class	PoseOutputterCreator
class	PoseOutputterFactory
class	PoseOutputterRegistrator
	This templated class will register an instance of an PoseOutputterCreator (class T) with the PoseOutputterFactory. It will ensure that no PoseOutputterCreator is registered twice, and, centralizes this registration logic so that thread safety issues can be handled in one place. More...
class	ScoreFileOutputSpecification
	The ScoreFileOutputSpecification giving all of the details of how to write a Pose out to disk in PDB format. More...
class	ScoreFileOutputter
	The ScoreFileOutputter. More...
class	ScoreFileOutputterCreator
class	SecondaryPoseOutputter
	The SecondaryPoseOutputter. More...
class	SecondaryPoseOutputterCreator
class	SecondaryPoseOutputterRegistrator
	This templated class will register an instance of an SecondaryPoseOutputterCreator (class T) with the PoseOutputterFactory. It will ensure that no SecondaryPoseOutputterCreator is registered twice, and, centralizes this registration logic so that thread safety issues can be handled in one place. More...
class	SilentFilePoseOutputSpecification
	The SilentFilePoseOutputSpecification giving all of the details of how to write a Pose out to disk as a silent file. More...
class	SilentFilePoseOutputter
	The SilentFilePoseOutputter. More...
class	SilentFilePoseOutputterCreator

Typedefs
typedef utility::pointer::shared_ptr < DeNovoSilentFilePoseOutputter >	DeNovoSilentFilePoseOutputterOP
typedef utility::pointer::shared_ptr < DeNovoSilentFilePoseOutputter const >	DeNovoSilentFilePoseOutputterCOP
typedef utility::pointer::shared_ptr < mmTFPoseOutputSpecification >	mmTFPoseOutputSpecificationOP
typedef utility::pointer::shared_ptr < mmTFPoseOutputSpecification const >	mmTFPoseOutputSpecificationCOP
typedef utility::pointer::shared_ptr < mmTFPoseOutputter >	mmTFPoseOutputterOP
typedef utility::pointer::shared_ptr < mmTFPoseOutputter const >	mmTFPoseOutputterCOP
typedef utility::pointer::shared_ptr < PDBPoseOutputSpecification >	PDBPoseOutputSpecificationOP
typedef utility::pointer::shared_ptr < PDBPoseOutputSpecification const >	PDBPoseOutputSpecificationCOP
typedef utility::pointer::shared_ptr < PDBPoseOutputter >	PDBPoseOutputterOP
typedef utility::pointer::shared_ptr < PDBPoseOutputter const >	PDBPoseOutputterCOP
typedef utility::pointer::shared_ptr < PoseOutputSpecification >	PoseOutputSpecificationOP
typedef utility::pointer::shared_ptr < PoseOutputSpecification const >	PoseOutputSpecificationCOP
typedef utility::pointer::shared_ptr < PoseOutputter >	PoseOutputterOP
typedef utility::pointer::shared_ptr < PoseOutputter const >	PoseOutputterCOP
typedef utility::pointer::shared_ptr < PoseOutputterCreator >	PoseOutputterCreatorOP
typedef utility::pointer::shared_ptr < PoseOutputterCreator const >	PoseOutputterCreatorCOP
typedef utility::pointer::shared_ptr < ScoreFileOutputSpecification >	ScoreFileOutputSpecificationOP
typedef utility::pointer::shared_ptr < ScoreFileOutputSpecification const >	ScoreFileOutputSpecificationCOP
typedef utility::pointer::shared_ptr < ScoreFileOutputter >	ScoreFileOutputterOP
typedef utility::pointer::shared_ptr < ScoreFileOutputter const >	ScoreFileOutputterCOP
typedef utility::pointer::shared_ptr < SecondaryPoseOutputter >	SecondaryPoseOutputterOP
typedef utility::pointer::shared_ptr < SecondaryPoseOutputter const >	SecondaryPoseOutputterCOP
typedef utility::pointer::shared_ptr < SecondaryPoseOutputterCreator >	SecondaryPoseOutputterCreatorOP
typedef utility::pointer::shared_ptr < SecondaryPoseOutputterCreator const >	SecondaryPoseOutputterCreatorCOP
typedef utility::pointer::shared_ptr < SilentFilePoseOutputSpecification >	SilentFilePoseOutputSpecificationOP
typedef utility::pointer::shared_ptr < SilentFilePoseOutputSpecification const >	SilentFilePoseOutputSpecificationCOP
typedef utility::pointer::shared_ptr < SilentFilePoseOutputter >	SilentFilePoseOutputterOP
typedef utility::pointer::shared_ptr < SilentFilePoseOutputter const >	SilentFilePoseOutputterCOP

Functions
static basic::Tracer	TR ("protocols.jd3.pose_outputters.DeNovoSilentFilePoseOutputter")
void	pose_outputter_xsd_type_definition_w_attributes (utility::tag::XMLSchemaDefinition &xsd, std::string const &outputter_type, std::string const &description, utility::tag::AttributeList const &attributes)
	Define the XML schema definition for a PoseOutputter that contains no subtags but may contain any number of attributes (aka options). More...
static basic::Tracer	TR ("protocols.jd3.pose_outputters.PoseOutputterFactory")

Typedef Documentation

typedef utility::pointer::shared_ptr< DeNovoSilentFilePoseOutputter const > protocols::jd3::pose_outputters::DeNovoSilentFilePoseOutputterCOP

typedef utility::pointer::shared_ptr< DeNovoSilentFilePoseOutputter > protocols::jd3::pose_outputters::DeNovoSilentFilePoseOutputterOP

typedef utility::pointer::shared_ptr< mmTFPoseOutputSpecification const > protocols::jd3::pose_outputters::mmTFPoseOutputSpecificationCOP

typedef utility::pointer::shared_ptr< mmTFPoseOutputSpecification > protocols::jd3::pose_outputters::mmTFPoseOutputSpecificationOP

typedef utility::pointer::shared_ptr< mmTFPoseOutputter const > protocols::jd3::pose_outputters::mmTFPoseOutputterCOP

typedef utility::pointer::shared_ptr< mmTFPoseOutputter > protocols::jd3::pose_outputters::mmTFPoseOutputterOP

typedef utility::pointer::shared_ptr< PDBPoseOutputSpecification const > protocols::jd3::pose_outputters::PDBPoseOutputSpecificationCOP

typedef utility::pointer::shared_ptr< PDBPoseOutputSpecification > protocols::jd3::pose_outputters::PDBPoseOutputSpecificationOP

typedef utility::pointer::shared_ptr< PDBPoseOutputter const > protocols::jd3::pose_outputters::PDBPoseOutputterCOP

typedef utility::pointer::shared_ptr< PDBPoseOutputter > protocols::jd3::pose_outputters::PDBPoseOutputterOP

typedef utility::pointer::shared_ptr< PoseOutputSpecification const > protocols::jd3::pose_outputters::PoseOutputSpecificationCOP

typedef utility::pointer::shared_ptr< PoseOutputSpecification > protocols::jd3::pose_outputters::PoseOutputSpecificationOP

typedef utility::pointer::shared_ptr< PoseOutputter const > protocols::jd3::pose_outputters::PoseOutputterCOP

typedef utility::pointer::shared_ptr< PoseOutputterCreator const > protocols::jd3::pose_outputters::PoseOutputterCreatorCOP

typedef utility::pointer::shared_ptr< PoseOutputterCreator > protocols::jd3::pose_outputters::PoseOutputterCreatorOP

typedef utility::pointer::shared_ptr< PoseOutputter > protocols::jd3::pose_outputters::PoseOutputterOP

typedef utility::pointer::shared_ptr< ScoreFileOutputSpecification const > protocols::jd3::pose_outputters::ScoreFileOutputSpecificationCOP

typedef utility::pointer::shared_ptr< ScoreFileOutputSpecification > protocols::jd3::pose_outputters::ScoreFileOutputSpecificationOP

typedef utility::pointer::shared_ptr< ScoreFileOutputter const > protocols::jd3::pose_outputters::ScoreFileOutputterCOP

typedef utility::pointer::shared_ptr< ScoreFileOutputter > protocols::jd3::pose_outputters::ScoreFileOutputterOP

typedef utility::pointer::shared_ptr< SecondaryPoseOutputter const > protocols::jd3::pose_outputters::SecondaryPoseOutputterCOP

typedef utility::pointer::shared_ptr< SecondaryPoseOutputterCreator const > protocols::jd3::pose_outputters::SecondaryPoseOutputterCreatorCOP

typedef utility::pointer::shared_ptr< SecondaryPoseOutputterCreator > protocols::jd3::pose_outputters::SecondaryPoseOutputterCreatorOP

typedef utility::pointer::shared_ptr< SecondaryPoseOutputter > protocols::jd3::pose_outputters::SecondaryPoseOutputterOP

typedef utility::pointer::shared_ptr< SilentFilePoseOutputSpecification const > protocols::jd3::pose_outputters::SilentFilePoseOutputSpecificationCOP

typedef utility::pointer::shared_ptr< SilentFilePoseOutputSpecification > protocols::jd3::pose_outputters::SilentFilePoseOutputSpecificationOP

typedef utility::pointer::shared_ptr< SilentFilePoseOutputter const > protocols::jd3::pose_outputters::SilentFilePoseOutputterCOP

typedef utility::pointer::shared_ptr< SilentFilePoseOutputter > protocols::jd3::pose_outputters::SilentFilePoseOutputterOP

Function Documentation

void protocols::jd3::pose_outputters::pose_outputter_xsd_type_definition_w_attributes	(	utility::tag::XMLSchemaDefinition &	xsd,
		std::string const &	outputter_type,
		std::string const &	description,
		utility::tag::AttributeList const &	attributes
	)

Define the XML schema definition for a PoseOutputter that contains no subtags but may contain any number of attributes (aka options).

References protocols::jd3::pose_outputters::PoseOutputterFactory::complex_type_name_for_pose_outputter().

Referenced by protocols::jd3::pose_outputters::mmTFPoseOutputter::provide_xml_schema(), protocols::jd3::pose_outputters::PDBPoseOutputter::provide_xml_schema(), protocols::jd3::pose_outputters::DeNovoSilentFilePoseOutputter::provide_xml_schema(), and protocols::jd3::pose_outputters::SilentFilePoseOutputter::provide_xml_schema().

static basic::Tracer protocols::jd3::pose_outputters::TR ( "protocols.jd3.pose_outputters.PoseOutputterFactory"  )

static

static basic::Tracer protocols::jd3::pose_outputters::TR ( "protocols.jd3.pose_outputters.DeNovoSilentFilePoseOutputter"  )

static

Referenced by protocols::jd3::pose_outputters::PDBPoseOutputter::job_has_already_completed(), protocols::jd3::pose_outputters::PoseOutputterFactory::new_pose_outputter(), and protocols::jd3::pose_outputters::PoseOutputterFactory::new_secondary_outputter().