core::import_pose::ImportPoseOptions Member List

This is the complete list of members for core::import_pose::ImportPoseOptions, including all inherited members.

append_schema_attributes(utility::tag::AttributeList &attrs)	core::import_pose::ImportPoseOptions	static
auto_detect_glycan_connections() const	core::io::StructFileRepOptions
centroid() const	core::import_pose::ImportPoseOptions
centroid_	core::import_pose::ImportPoseOptions	private
chains_whose_residues_are_separate_chemical_entities() const	core::io::StructFileRepOptions
check_if_residues_are_Ctermini() const	core::io::StructFileRepOptions
check_if_residues_are_Ntermini() const	core::io::StructFileRepOptions
clone() const	core::io::StructFileRepOptions	virtual
connect_info_cutoff() const	core::io::StructFileRepOptions
constraints_from_link_records() const	core::io::StructFileRepOptions
do_not_autoassign_SS() const	core::io::StructFileRepOptions
exit_if_missing_heavy_atoms() const	core::io::StructFileRepOptions
fold_tree_io() const	core::import_pose::ImportPoseOptions
fold_tree_io_	core::import_pose::ImportPoseOptions	private
glycam_pdb_format() const	core::io::StructFileReaderOptions
guarantee_no_DNA() const	core::io::StructFileRepOptions
ignore_sugars() const	core::io::StructFileRepOptions
ignore_unrecognized_res() const	core::io::StructFileRepOptions
ignore_waters() const	core::io::StructFileRepOptions
ignore_zero_occupancy() const	core::io::StructFileRepOptions
ImportPoseOptions()	core::import_pose::ImportPoseOptions
ImportPoseOptions(utility::options::OptionCollection const &options)	core::import_pose::ImportPoseOptions
init_from_options(utility::options::OptionCollection const &options)	core::import_pose::ImportPoseOptions	private
integration_test_mode() const	core::io::StructFileRepOptions
keep_input_protonation_state() const	core::io::StructFileRepOptions
list_options_read(utility::options::OptionKeyList &read_options)	core::import_pose::ImportPoseOptions	static
maintain_links() const	core::io::StructFileRepOptions
max_bond_length() const	core::io::StructFileRepOptions
membrane() const	core::import_pose::ImportPoseOptions
membrane_	core::import_pose::ImportPoseOptions	private
metal_bond_angle_constraint_multiplier() const	core::import_pose::ImportPoseOptions
metal_bond_angle_constraint_multiplier_	core::import_pose::ImportPoseOptions	private
metal_bond_dist_constraint_multiplier() const	core::import_pose::ImportPoseOptions
metal_bond_dist_constraint_multiplier_	core::import_pose::ImportPoseOptions	private
metal_bond_LJ_multiplier() const	core::import_pose::ImportPoseOptions
metal_bond_LJ_multiplier_	core::import_pose::ImportPoseOptions	private
min_bond_length() const	core::io::StructFileRepOptions
missing_dens_as_jump() const	core::io::StructFileRepOptions
mmtf_extra_data_io() const	core::io::StructFileReaderOptions
new_chain_order() const	core::io::StructFileReaderOptions
no_chainend_ter() const	core::io::StructFileRepOptions
no_detect_pseudobonds() const	core::io::StructFileRepOptions
no_optH() const	core::import_pose::ImportPoseOptions
no_optH_	core::import_pose::ImportPoseOptions	private
no_output_cen() const	core::io::StructFileRepOptions
normalize_to_thk() const	core::io::StructFileRepOptions
obey_ENDMDL() const	core::io::StructFileReaderOptions
operator<(ImportPoseOptions const &other) const	core::import_pose::ImportPoseOptions
core::io::StructFileReaderOptions::operator<(StructFileReaderOptions const &other) const	core::io::StructFileReaderOptions
core::io::StructFileRepOptions::operator<(StructFileRepOptions const &other) const	core::io::StructFileRepOptions
operator==(ImportPoseOptions const &other) const	core::import_pose::ImportPoseOptions
core::io::StructFileReaderOptions::operator==(StructFileReaderOptions const &other) const	core::io::StructFileReaderOptions
core::io::StructFileRepOptions::operator==(StructFileRepOptions const &other) const	core::io::StructFileRepOptions
output_alternate_atomids() const	core::io::StructFileRepOptions
output_ligands_as_separate_chains() const	core::io::StructFileRepOptions
output_only_asymmetric_unit() const	core::io::StructFileRepOptions
output_pose_cache() const	core::io::StructFileRepOptions
output_pose_energies_table() const	core::io::StructFileRepOptions
output_secondary_structure() const	core::io::StructFileRepOptions
output_torsions() const	core::io::StructFileRepOptions
output_virtual() const	core::io::StructFileRepOptions
output_virtual_zero_occ() const	core::io::StructFileRepOptions
pack_missing_sidechains() const	core::import_pose::ImportPoseOptions
pack_missing_sidechains_	core::import_pose::ImportPoseOptions	private
parse_my_tag(utility::tag::TagCOP tag) override	core::import_pose::ImportPoseOptions	virtual
pdb_author() const	core::io::StructFileRepOptions
pdb_comments() const	core::io::StructFileRepOptions
pdb_parents() const	core::io::StructFileRepOptions
per_chain_renumbering() const	core::io::StructFileRepOptions
preserve_crystinfo() const	core::io::StructFileRepOptions
preserve_header() const	core::io::StructFileRepOptions
randomize_missing_coords() const	core::io::StructFileRepOptions
read_fold_tree() const	core::import_pose::ImportPoseOptions
read_fold_tree_	core::import_pose::ImportPoseOptions	private
read_only_ATOM_entries() const	core::io::StructFileRepOptions
read_pdb_header() const	core::io::StructFileReaderOptions
remember_unrecognized_res() const	core::io::StructFileRepOptions
remember_unrecognized_water() const	core::io::StructFileRepOptions
renumber_pdb() const	core::io::StructFileRepOptions
residue_type_set_mode() const	core::import_pose::ImportPoseOptions
residue_type_set_mode_	core::import_pose::ImportPoseOptions	private
residues_for_atom_name_remapping() const	core::io::StructFileRepOptions
set_auto_detect_glycan_connections(bool const auto_detect_glycan_connections)	core::io::StructFileRepOptions
set_centroid(bool centroid)	core::import_pose::ImportPoseOptions
set_chains_whose_residues_are_separate_chemical_entities(std::string const &setting)	core::io::StructFileRepOptions
set_check_if_residues_are_Ctermini(std::string const &check_if_residues_are_Ctermini)	core::io::StructFileRepOptions
set_check_if_residues_are_Ntermini(std::string const &check_if_residues_are_Ntermini)	core::io::StructFileRepOptions
set_connect_info_cutoff(core::Real const &connect_info_cutoff)	core::io::StructFileRepOptions
set_constraints_from_link_records(bool const setting)	core::io::StructFileRepOptions
set_do_not_autoassign_SS(bool const do_not_autoassign_SS)	core::io::StructFileRepOptions
set_exit_if_missing_heavy_atoms(bool const exit_if_missing_heavy_atoms)	core::io::StructFileRepOptions
set_fold_tree_io(bool fold_tree_io)	core::import_pose::ImportPoseOptions
set_glycam_pdb_format(bool setting)	core::io::StructFileReaderOptions
set_guarantee_no_DNA(bool const guarantee_no_DNA)	core::io::StructFileRepOptions
set_ignore_sugars(bool const setting)	core::io::StructFileRepOptions
set_ignore_unrecognized_res(bool const ignore_unrecognized_res)	core::io::StructFileRepOptions
set_ignore_waters(bool const ignore_waters)	core::io::StructFileRepOptions
set_ignore_zero_occupancy(bool const ignore_zero_occupancy)	core::io::StructFileRepOptions
set_integration_test_mode(bool const setting)	core::io::StructFileRepOptions
set_keep_input_protonation_state(bool const keep_input_protonation_state)	core::io::StructFileRepOptions
set_maintain_links(bool const maintain_links)	core::io::StructFileRepOptions
set_max_bond_length(core::Real const max_bond_length)	core::io::StructFileRepOptions
set_membrane(bool membrane)	core::import_pose::ImportPoseOptions
set_metal_bond_angle_constraint_multiplier(core::Real invalue)	core::import_pose::ImportPoseOptions
set_metal_bond_dist_constraint_multiplier(core::Real invalue)	core::import_pose::ImportPoseOptions
set_metal_bond_LJ_multiplier(core::Real invalue)	core::import_pose::ImportPoseOptions
set_min_bond_length(core::Real const min_bond_length)	core::io::StructFileRepOptions
set_missing_dens_as_jump(bool const missing_dens_as_jump)	core::io::StructFileRepOptions
set_mmtf_extra_data_io(bool setting)	core::io::StructFileReaderOptions
set_new_chain_order(bool setting)	core::io::StructFileReaderOptions
set_no_chainend_ter(bool const no_chainend_ter)	core::io::StructFileRepOptions
set_no_detect_pseudobonds(bool const setting)	core::io::StructFileRepOptions
set_no_optH(bool no_optH)	core::import_pose::ImportPoseOptions
set_no_output_cen(bool const no_output_cen)	core::io::StructFileRepOptions
set_normalize_to_thk(bool const normalize_to_thk)	core::io::StructFileRepOptions
set_obey_ENDMDL(bool setting)	core::io::StructFileReaderOptions
set_output_alternate_atomids(bool const output_alternate_atomids)	core::io::StructFileRepOptions
set_output_ligands_as_separate_chains(bool const output_ligands_as_separate_chains)	core::io::StructFileRepOptions
set_output_only_asymmetric_unit(bool const output_only_asymmetric_unit)	core::io::StructFileRepOptions
set_output_pose_cache_data(bool const setting)	core::io::StructFileRepOptions
set_output_pose_energies_table(bool const setting)	core::io::StructFileRepOptions
set_output_secondary_structure(bool const output_secondary_structure)	core::io::StructFileRepOptions
set_output_torsions(bool const output_torsions)	core::io::StructFileRepOptions
set_output_virtual(bool const output_virtual)	core::io::StructFileRepOptions
set_output_virtual_zero_occ(bool const output_virtual_zero_occ)	core::io::StructFileRepOptions
set_pack_missing_sidechains(bool pack_missing_sidechains)	core::import_pose::ImportPoseOptions
set_pdb_author(std::string const &pdb_author)	core::io::StructFileRepOptions
set_pdb_comments(bool const pdb_comments)	core::io::StructFileRepOptions
set_pdb_parents(bool const pdb_parents)	core::io::StructFileRepOptions
set_per_chain_renumbering(bool const per_chain_renumbering)	core::io::StructFileRepOptions
set_preserve_crystinfo(bool const preserve_crystinfo)	core::io::StructFileRepOptions
set_preserve_header(bool const preserve_header)	core::io::StructFileRepOptions
set_randomize_missing_coords(bool const randomize_missing_coords)	core::io::StructFileRepOptions
set_read_fold_tree(bool read_fold_tree)	core::import_pose::ImportPoseOptions
set_read_only_ATOM_entries(bool const setting)	core::io::StructFileRepOptions
set_read_pdb_header(bool setting)	core::io::StructFileReaderOptions
set_remember_unrecognized_res(bool const remember_unrecognized_res)	core::io::StructFileRepOptions
set_remember_unrecognized_water(bool const remember_unrecognized_water)	core::io::StructFileRepOptions
set_renumber_pdb(bool const setting)	core::io::StructFileRepOptions
set_residue_type_set_mode(core::chemical::TypeSetMode residue_type_set_mode)	core::import_pose::ImportPoseOptions
set_residues_for_atom_name_remapping(utility::vector1< std::string > const &setting)	core::io::StructFileRepOptions
set_set_up_metal_bonds(bool invalue)	core::import_pose::ImportPoseOptions
set_show_all_fixes(bool const setting)	core::io::StructFileRepOptions
set_skip_connect_info(bool const skip_connect_info)	core::io::StructFileRepOptions
set_skip_set_reasonable_fold_tree(bool skip_set_reasonable_fold_tree)	core::import_pose::ImportPoseOptions
set_suppress_zero_occ_pdb_output(bool const setting)	core::io::StructFileRepOptions
set_up_metal_bonds() const	core::import_pose::ImportPoseOptions
set_up_metal_bonds_	core::import_pose::ImportPoseOptions	private
set_up_metal_constraints() const	core::import_pose::ImportPoseOptions
set_use_pdb_format_HETNAM_records(bool const setting)	core::io::StructFileRepOptions
set_write_all_connect_info(bool const setting)	core::io::StructFileRepOptions
set_write_glycan_pdb_codes(bool const write_glycan_pdb_codes)	core::io::StructFileRepOptions
set_write_pdb_link_records(bool const setting)	core::io::StructFileRepOptions
set_write_pdb_parametric_info(bool const setting)	core::io::StructFileRepOptions
set_write_pdb_title_section_records(bool const setting)	core::io::StructFileRepOptions
set_write_seqres_records(bool const setting)	core::io::StructFileRepOptions
show_all_fixes() const	core::io::StructFileRepOptions
skip_connect_info() const	core::io::StructFileRepOptions
skip_set_reasonable_fold_tree() const	core::import_pose::ImportPoseOptions
skip_set_reasonable_fold_tree_	core::import_pose::ImportPoseOptions	private
StructFileReaderOptions()	core::io::StructFileReaderOptions
StructFileReaderOptions(utility::options::OptionCollection const &options)	core::io::StructFileReaderOptions
StructFileRepOptions()	core::io::StructFileRepOptions
StructFileRepOptions(utility::options::OptionCollection const &options)	core::io::StructFileRepOptions
suppress_zero_occ_pdb_output() const	core::io::StructFileRepOptions
type() const override	core::import_pose::ImportPoseOptions	virtual
use_pdb_format_HETNAM_records() const	core::io::StructFileRepOptions
write_all_connect_info() const	core::io::StructFileRepOptions
write_glycan_pdb_codes() const	core::io::StructFileRepOptions
write_pdb_link_records() const	core::io::StructFileRepOptions
write_pdb_parametric_info() const	core::io::StructFileRepOptions
write_pdb_title_section_records() const	core::io::StructFileRepOptions
write_seqres_records() const	core::io::StructFileRepOptions
~ImportPoseOptions() override	core::import_pose::ImportPoseOptions
~StructFileReaderOptions() override	core::io::StructFileReaderOptions
~StructFileRepOptions() override	core::io::StructFileRepOptions