#include <SS_predictor.hh>

Inheritance diagram for protocols::ss_prediction::SS_predictor:

Public Member Functions
	SS_predictor (std::string type)
	Reads in models for SS prediction etc. More...

	~SS_predictor () override

utility::vector1 < utility::vector1< core::Real > >	predict_ss (std::string fasta)

Private Member Functions
void	load_models (std::string rd1_model_fl, std::string rd2_model_fl)

std::string	get_window_aa (std::string fasta, core::SSize position)

utility::vector1< core::Real >	predict_pos_rd1 (std::string window_aa)

utility::vector1< core::Real >	predict_pos_rd2 (utility::vector1< utility::vector1< core::Real > > rd1_preds, core::SSize position, std::string fasta)

utility::vector1 < utility::vector1< core::Real > >	predict_rd1 (std::string fasta)

utility::vector1 < utility::vector1< core::Real > >	predict_rd2 (utility::vector1< utility::vector1< core::Real > > rd1_preds, std::string fasta)

Private Attributes
utility::libsvm::Svm_rosettaOP	rd1_model

utility::libsvm::Svm_rosettaOP	rd2_model

std::string	ss_type

Constructor & Destructor Documentation

protocols::ss_prediction::SS_predictor::SS_predictor ( std::string type )

Reads in models for SS prediction etc.

protocols::ss_prediction::SS_predictor::~SS_predictor ( )

overridedefault

Member Function Documentation

string protocols::ss_prediction::SS_predictor::get_window_aa	(	std::string	fasta,
		core::SSize	position
	)

private

void protocols::ss_prediction::SS_predictor::load_models	(	std::string	rd1_model_fl,
		std::string	rd2_model_fl
	)

private

vector1< Real > protocols::ss_prediction::SS_predictor::predict_pos_rd1 ( std::string window_aa )

private

vector1< Real > protocols::ss_prediction::SS_predictor::predict_pos_rd2	(	utility::vector1< utility::vector1< core::Real > >	rd1_preds,
		core::SSize	position,
		std::string	fasta
	)

private

vector1< vector1< Real > > protocols::ss_prediction::SS_predictor::predict_rd1 ( std::string fasta )

private

vector1< vector1< Real > > protocols::ss_prediction::SS_predictor::predict_rd2	(	utility::vector1< utility::vector1< core::Real > >	rd1_preds,
		std::string	fasta
	)

private

vector1< vector1< Real > > protocols::ss_prediction::SS_predictor::predict_ss ( std::string fasta )

utility::libsvm::Svm_rosettaOP protocols::ss_prediction::SS_predictor::rd1_model

private

utility::libsvm::Svm_rosettaOP protocols::ss_prediction::SS_predictor::rd2_model

private

std::string protocols::ss_prediction::SS_predictor::ss_type

private

const core::Size protocols::ss_prediction::SS_predictor::WINDOW_SIZE = 15

staticprivate

The documentation for this class was generated from the following files: