build_pose_as_is.cc File Reference

#include <core/io/pdb/Field.hh>
#include <core/io/HeaderInformation.hh>
#include <core/io/pdb/build_pose_as_is.hh>
#include <core/io/StructFileRepOptions.hh>
#include <core/io/StructFileRep.hh>
#include <core/io/pdb/pdb_reader.hh>
#include <core/io/pose_from_sfr/PoseFromSFRBuilder.hh>
#include <core/io/StructFileReaderOptions.hh>
#include <core/io/NomenclatureManager.hh>
#include <core/io/util.hh>
#include <core/types.hh>
#include <core/id/AtomID.hh>
#include <core/id/NamedAtomID.hh>
#include <core/id/NamedAtomID_Map.hh>
#include <core/io/raw_data/DisulfideFile.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/AtomType.hh>
#include <core/chemical/AtomTypeSet.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/ResidueTypeFinder.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/Patch.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/util.hh>
#include <core/chemical/VariantType.hh>
#include <core/chemical/carbohydrates/CarbohydrateInfo.hh>
#include <core/chemical/carbohydrates/CarbohydrateInfoManager.hh>
#include <core/chemical/types.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/conformation/parametric/Parameters.hh>
#include <core/conformation/parametric/ParametersSet.hh>
#include <core/io/pose_to_sfr/PoseToStructFileRepConverter.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/membrane/MembraneInfo.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/util.hh>
#include <core/pose/ncbb/util.hh>
#include <core/pose/util.tmpl.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <core/scoring/cryst/util.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/chemical.OptionKeys.gen.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/mp.OptionKeys.gen.hh>
#include <basic/options/keys/inout.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <basic/Tracer.hh>
#include <numeric/random/random.hh>
#include <numeric/xyz.functions.hh>
#include <utility/vector1.hh>
#include <utility/string_util.hh>
#include <utility/tools/make_vector1.hh>
#include <utility/io/ozstream.hh>
#include <utility/io/izstream.hh>
#include <utility/exit.hh>
#include <ObjexxFCL/format.hh>
#include <fstream>
#include <sstream>
#include <cstdlib>
#include <cstdio>
#include <utility>

Namespaces
	core
	A class for reading in the atom type properties.
	core::io
	core::io::pdb

Functions
static basic::Tracer	core::io::pdb::TR ("core.io.pdb.file_data")
void	core::io::pdb::build_pose_from_pdb_as_is (pose::Pose &pose, std::string const &filename)
	Builds a pose into <pose>, without repacking or optimizing hydrogens; using the full-atom ResidueTypeSet. More...
void	core::io::pdb::build_pose_from_pdb_as_is (pose::Pose &pose, std::string const &filename, StructFileReaderOptions const &pdr_options)
	Builds a pose into <pose>, without repacking or optimizing hydrogens; using the full-atom ResidueTypeSet and a set of options. More...
void	core::io::pdb::build_pose_from_pdb_as_is (pose::Pose &pose, chemical::ResidueTypeSet const &residue_set, std::string const &filename)
void	core::io::pdb::build_pose_from_pdb_as_is (pose::Pose &pose, chemical::ResidueTypeSet const &residue_set, std::string const &filename, StructFileReaderOptions const &pdr_options)
void	core::io::pdb::build_pose_from_pdb_as_is (pose::Pose &pose, chemical::ResidueTypeSet const &residue_set, std::string const &filename, std::istream &file_contents, StructFileReaderOptions const &pdr_options)