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Rosetta
2021.16
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This is the complete list of members for protocols::rosetta_scripts::RosettaScriptsParser, including all inherited members.
| create_tag_from_xml(std::string const &xml_fname, utility::options::OptionCollection const &options) | protocols::rosetta_scripts::RosettaScriptsParser | |
| create_tag_from_xml(std::string const &xml_fname, utility::vector1< std::string > const &script_vars) | protocols::rosetta_scripts::RosettaScriptsParser | |
| create_tag_from_xml_string(std::string const &xml_text, utility::options::OptionCollection const &options) | protocols::rosetta_scripts::RosettaScriptsParser | |
| create_tag_from_xml_string(std::string const &xml_text, utility::vector1< std::string > const &script_vars) | protocols::rosetta_scripts::RosettaScriptsParser | |
| find_rosettascript_tag(utility::tag::TagCOP rootTag, const std::string §ion_name, const std::string &option_name, const std::string &option_value) | protocols::rosetta_scripts::RosettaScriptsParser | |
| finish_creating_tag(std::string const &xml_fname, utility::vector1< std::string > const &script_vars, std::string const &substituted_contents) const | protocols::rosetta_scripts::RosettaScriptsParser | private |
| generate_mover(std::string const &xml_fname, std::string const ¤t_input_name="", std::string const ¤t_output_name="") | protocols::rosetta_scripts::RosettaScriptsParser | |
| generate_mover(std::string const &xml_fname, utility::vector1< std::string > const &script_vars, std::string const ¤t_input_name="", std::string const ¤t_output_name="") | protocols::rosetta_scripts::RosettaScriptsParser | |
| generate_mover(utility::options::OptionCollection const &options, std::string const ¤t_input_name, std::string const ¤t_output_name, basic::resource_manager::ResourceManagerOP resource_manager) | protocols::rosetta_scripts::RosettaScriptsParser | |
| generate_mover(utility::options::OptionCollection const &options, std::string const &xml_fname, std::string const ¤t_input_name="", std::string const ¤t_output_name="", XmlObjectsOP xml_objects=nullptr, basic::resource_manager::ResourceManagerOP resource_manager=nullptr) | protocols::rosetta_scripts::RosettaScriptsParser | |
| generate_mover(utility::options::OptionCollectionCOP options, std::string const ¤t_input_name, std::string const ¤t_output_name, basic::resource_manager::ResourceManagerOP resource_manager) | protocols::rosetta_scripts::RosettaScriptsParser | |
| generate_mover(utility::options::OptionCollectionCOP options, std::string const &xml_fname, std::string const ¤t_input_name="", std::string const ¤t_output_name="", XmlObjectsOP xml_objects=nullptr, basic::resource_manager::ResourceManagerOP resource_manager=nullptr) | protocols::rosetta_scripts::RosettaScriptsParser | |
| generate_mover(MoverOP &mover, bool new_input, std::string const &xml_file, std::string const ¤t_input_name="", std::string const ¤t_output_name="", bool guarantee_new_mover=false) | protocols::rosetta_scripts::RosettaScriptsParser | |
| generate_mover_for_protocol(utility::tag::TagCOP protocol_tag, utility::options::OptionCollection const &options, std::string const ¤t_input_name="", std::string const ¤t_output_name="", XmlObjectsOP xml_objects=nullptr, basic::resource_manager::ResourceManagerOP resource_manager=nullptr) | protocols::rosetta_scripts::RosettaScriptsParser | |
| generate_mover_for_protocol(utility::tag::TagCOP protocol_tag, basic::datacache::DataMap &data, utility::options::OptionCollection const &options, XmlObjectsOP xml_objects=nullptr, basic::resource_manager::ResourceManagerOP resource_manager=nullptr) | protocols::rosetta_scripts::RosettaScriptsParser | |
| generate_mover_for_protocol(core::pose::Pose &, bool &, utility::tag::TagCOP protocol_tag, utility::options::OptionCollection const &options, std::string const ¤t_input_name="", std::string const ¤t_output_name="", XmlObjectsOP xml_objects=nullptr, basic::resource_manager::ResourceManagerOP resource_manager=nullptr) | protocols::rosetta_scripts::RosettaScriptsParser | inline |
| generate_mover_xml_string(utility::options::OptionCollection const &options, std::string const &xml_text, std::string const ¤t_input_name, std::string const ¤t_output_name, XmlObjectsOP xml_objects) | protocols::rosetta_scripts::RosettaScriptsParser | |
| generate_mover_xml_string(utility::options::OptionCollectionCOP options, std::string const &xml_text, std::string const ¤t_input_name, std::string const ¤t_output_name, XmlObjectsOP xml_objects) | protocols::rosetta_scripts::RosettaScriptsParser | |
| has_double_percent_signs(std::string const &str, core::Size const endpos) const | protocols::rosetta_scripts::RosettaScriptsParser | private |
| has_slash_at_end(std::string const &str, core::Size const endpos) const | protocols::rosetta_scripts::RosettaScriptsParser | private |
| import_tags(std::set< ImportTagName > &import_tag_names, utility::tag::TagCOP my_tag, basic::datacache::DataMap &data) const | protocols::rosetta_scripts::RosettaScriptsParser | |
| ImportTagName typedef | protocols::rosetta_scripts::RosettaScriptsParser | |
| initialize_data_map(basic::datacache::DataMap &data, utility::options::OptionCollection const &options) | protocols::rosetta_scripts::RosettaScriptsParser | |
| instantiate_filter(utility::tag::TagCOP const &tag_ptr, basic::datacache::DataMap &data) const | protocols::rosetta_scripts::RosettaScriptsParser | |
| instantiate_mover(utility::tag::TagCOP const &tag_ptr, basic::datacache::DataMap &data) const | protocols::rosetta_scripts::RosettaScriptsParser | |
| instantiate_packer_palette(utility::tag::TagCOP const &tag_ptr, basic::datacache::DataMap &data) const | protocols::rosetta_scripts::RosettaScriptsParser | |
| instantiate_taskoperation(utility::tag::TagCOP const &tag_ptr, basic::datacache::DataMap &data) const | protocols::rosetta_scripts::RosettaScriptsParser | |
| list_options_read(utility::options::OptionKeyList &read_options) | protocols::rosetta_scripts::RosettaScriptsParser | static |
| load_native(std::string const &fname) | protocols::rosetta_scripts::RosettaScriptsParser | private |
| local_options_ | protocols::rosetta_scripts::RosettaScriptsParser | private |
| MoverOP typedef | protocols::rosetta_scripts::RosettaScriptsParser | |
| native_pose_ | protocols::rosetta_scripts::RosettaScriptsParser | private |
| parse_apply_to_pose_tag(utility::tag::TagCOP apply_tag, basic::datacache::DataMap &data) const | protocols::rosetta_scripts::RosettaScriptsParser | |
| parse_import_tag(utility::tag::TagCOP import_tag, basic::datacache::DataMap &data) const | protocols::rosetta_scripts::RosettaScriptsParser | |
| parse_protocol_tag(utility::tag::TagCOP protocol_tag, utility::options::OptionCollection const &options) | protocols::rosetta_scripts::RosettaScriptsParser | |
| parse_resources_tag(utility::tag::TagCOP resources_tag, basic::datacache::DataMap &data, basic::resource_manager::ResourceManagerOP resource_manager) const | protocols::rosetta_scripts::RosettaScriptsParser | |
| protocol_option_set(utility::options::OptionCollection const &options) const | protocols::rosetta_scripts::RosettaScriptsParser | |
| read_in_and_recursively_replace_includes(std::string const &filename, std::string &substituted_contents, utility::vector1< std::string > filenames_encountered, core::Size const recursion_level, bool const do_not_recurse=false, std::string const &xml_text_for_top_level="") const | protocols::rosetta_scripts::RosettaScriptsParser | |
| recursion_limit_ | protocols::rosetta_scripts::RosettaScriptsParser | private |
| register_factory_prototypes() | protocols::rosetta_scripts::RosettaScriptsParser | static |
| rosetta_scripts_complex_type_naming_func(std::string const &element_name) | protocols::rosetta_scripts::RosettaScriptsParser | static |
| rosetta_scripts_element_name() | protocols::rosetta_scripts::RosettaScriptsParser | static |
| RosettaScriptsParser() | protocols::rosetta_scripts::RosettaScriptsParser | |
| set_recursion_limit(utility::options::OptionCollection const &options) | protocols::rosetta_scripts::RosettaScriptsParser | |
| substitute_variables_in_stream(std::istream &in, utility::vector1< std::string > const &script_vars, std::stringstream &out) | protocols::rosetta_scripts::RosettaScriptsParser | static |
| TagCOP typedef | protocols::rosetta_scripts::RosettaScriptsParser | |
| TagCOPs typedef | protocols::rosetta_scripts::RosettaScriptsParser | |
| validate_input_script_against_xsd(std::string const &fname, std::stringstream const &input_xml) const | protocols::rosetta_scripts::RosettaScriptsParser | |
| validator_ | protocols::rosetta_scripts::RosettaScriptsParser | private |
| write_ROSETTASCRIPTS_complex_type(utility::tag::XMLSchemaDefinition &) | protocols::rosetta_scripts::RosettaScriptsParser | static |
| xsd_for_rosetta_scripts() | protocols::rosetta_scripts::RosettaScriptsParser | static |
| ~RosettaScriptsParser() override | protocols::rosetta_scripts::RosettaScriptsParser |
1.8.7