Rosetta  2021.16
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protocols::rosetta_scripts::RosettaScriptsParser Member List

This is the complete list of members for protocols::rosetta_scripts::RosettaScriptsParser, including all inherited members.

create_tag_from_xml(std::string const &xml_fname, utility::options::OptionCollection const &options)protocols::rosetta_scripts::RosettaScriptsParser
create_tag_from_xml(std::string const &xml_fname, utility::vector1< std::string > const &script_vars)protocols::rosetta_scripts::RosettaScriptsParser
create_tag_from_xml_string(std::string const &xml_text, utility::options::OptionCollection const &options)protocols::rosetta_scripts::RosettaScriptsParser
create_tag_from_xml_string(std::string const &xml_text, utility::vector1< std::string > const &script_vars)protocols::rosetta_scripts::RosettaScriptsParser
find_rosettascript_tag(utility::tag::TagCOP rootTag, const std::string &section_name, const std::string &option_name, const std::string &option_value)protocols::rosetta_scripts::RosettaScriptsParser
finish_creating_tag(std::string const &xml_fname, utility::vector1< std::string > const &script_vars, std::string const &substituted_contents) const protocols::rosetta_scripts::RosettaScriptsParserprivate
generate_mover(std::string const &xml_fname, std::string const &current_input_name="", std::string const &current_output_name="")protocols::rosetta_scripts::RosettaScriptsParser
generate_mover(std::string const &xml_fname, utility::vector1< std::string > const &script_vars, std::string const &current_input_name="", std::string const &current_output_name="")protocols::rosetta_scripts::RosettaScriptsParser
generate_mover(utility::options::OptionCollection const &options, std::string const &current_input_name, std::string const &current_output_name, basic::resource_manager::ResourceManagerOP resource_manager)protocols::rosetta_scripts::RosettaScriptsParser
generate_mover(utility::options::OptionCollection const &options, std::string const &xml_fname, std::string const &current_input_name="", std::string const &current_output_name="", XmlObjectsOP xml_objects=nullptr, basic::resource_manager::ResourceManagerOP resource_manager=nullptr)protocols::rosetta_scripts::RosettaScriptsParser
generate_mover(utility::options::OptionCollectionCOP options, std::string const &current_input_name, std::string const &current_output_name, basic::resource_manager::ResourceManagerOP resource_manager)protocols::rosetta_scripts::RosettaScriptsParser
generate_mover(utility::options::OptionCollectionCOP options, std::string const &xml_fname, std::string const &current_input_name="", std::string const &current_output_name="", XmlObjectsOP xml_objects=nullptr, basic::resource_manager::ResourceManagerOP resource_manager=nullptr)protocols::rosetta_scripts::RosettaScriptsParser
generate_mover(MoverOP &mover, bool new_input, std::string const &xml_file, std::string const &current_input_name="", std::string const &current_output_name="", bool guarantee_new_mover=false)protocols::rosetta_scripts::RosettaScriptsParser
generate_mover_for_protocol(utility::tag::TagCOP protocol_tag, utility::options::OptionCollection const &options, std::string const &current_input_name="", std::string const &current_output_name="", XmlObjectsOP xml_objects=nullptr, basic::resource_manager::ResourceManagerOP resource_manager=nullptr)protocols::rosetta_scripts::RosettaScriptsParser
generate_mover_for_protocol(utility::tag::TagCOP protocol_tag, basic::datacache::DataMap &data, utility::options::OptionCollection const &options, XmlObjectsOP xml_objects=nullptr, basic::resource_manager::ResourceManagerOP resource_manager=nullptr)protocols::rosetta_scripts::RosettaScriptsParser
generate_mover_for_protocol(core::pose::Pose &, bool &, utility::tag::TagCOP protocol_tag, utility::options::OptionCollection const &options, std::string const &current_input_name="", std::string const &current_output_name="", XmlObjectsOP xml_objects=nullptr, basic::resource_manager::ResourceManagerOP resource_manager=nullptr)protocols::rosetta_scripts::RosettaScriptsParserinline
generate_mover_xml_string(utility::options::OptionCollection const &options, std::string const &xml_text, std::string const &current_input_name, std::string const &current_output_name, XmlObjectsOP xml_objects)protocols::rosetta_scripts::RosettaScriptsParser
generate_mover_xml_string(utility::options::OptionCollectionCOP options, std::string const &xml_text, std::string const &current_input_name, std::string const &current_output_name, XmlObjectsOP xml_objects)protocols::rosetta_scripts::RosettaScriptsParser
has_double_percent_signs(std::string const &str, core::Size const endpos) const protocols::rosetta_scripts::RosettaScriptsParserprivate
has_slash_at_end(std::string const &str, core::Size const endpos) const protocols::rosetta_scripts::RosettaScriptsParserprivate
import_tags(std::set< ImportTagName > &import_tag_names, utility::tag::TagCOP my_tag, basic::datacache::DataMap &data) const protocols::rosetta_scripts::RosettaScriptsParser
ImportTagName typedefprotocols::rosetta_scripts::RosettaScriptsParser
initialize_data_map(basic::datacache::DataMap &data, utility::options::OptionCollection const &options)protocols::rosetta_scripts::RosettaScriptsParser
instantiate_filter(utility::tag::TagCOP const &tag_ptr, basic::datacache::DataMap &data) const protocols::rosetta_scripts::RosettaScriptsParser
instantiate_mover(utility::tag::TagCOP const &tag_ptr, basic::datacache::DataMap &data) const protocols::rosetta_scripts::RosettaScriptsParser
instantiate_packer_palette(utility::tag::TagCOP const &tag_ptr, basic::datacache::DataMap &data) const protocols::rosetta_scripts::RosettaScriptsParser
instantiate_taskoperation(utility::tag::TagCOP const &tag_ptr, basic::datacache::DataMap &data) const protocols::rosetta_scripts::RosettaScriptsParser
list_options_read(utility::options::OptionKeyList &read_options)protocols::rosetta_scripts::RosettaScriptsParserstatic
load_native(std::string const &fname)protocols::rosetta_scripts::RosettaScriptsParserprivate
local_options_protocols::rosetta_scripts::RosettaScriptsParserprivate
MoverOP typedefprotocols::rosetta_scripts::RosettaScriptsParser
native_pose_protocols::rosetta_scripts::RosettaScriptsParserprivate
parse_apply_to_pose_tag(utility::tag::TagCOP apply_tag, basic::datacache::DataMap &data) const protocols::rosetta_scripts::RosettaScriptsParser
parse_import_tag(utility::tag::TagCOP import_tag, basic::datacache::DataMap &data) const protocols::rosetta_scripts::RosettaScriptsParser
parse_protocol_tag(utility::tag::TagCOP protocol_tag, utility::options::OptionCollection const &options)protocols::rosetta_scripts::RosettaScriptsParser
parse_resources_tag(utility::tag::TagCOP resources_tag, basic::datacache::DataMap &data, basic::resource_manager::ResourceManagerOP resource_manager) const protocols::rosetta_scripts::RosettaScriptsParser
protocol_option_set(utility::options::OptionCollection const &options) const protocols::rosetta_scripts::RosettaScriptsParser
read_in_and_recursively_replace_includes(std::string const &filename, std::string &substituted_contents, utility::vector1< std::string > filenames_encountered, core::Size const recursion_level, bool const do_not_recurse=false, std::string const &xml_text_for_top_level="") const protocols::rosetta_scripts::RosettaScriptsParser
recursion_limit_protocols::rosetta_scripts::RosettaScriptsParserprivate
register_factory_prototypes()protocols::rosetta_scripts::RosettaScriptsParserstatic
rosetta_scripts_complex_type_naming_func(std::string const &element_name)protocols::rosetta_scripts::RosettaScriptsParserstatic
rosetta_scripts_element_name()protocols::rosetta_scripts::RosettaScriptsParserstatic
RosettaScriptsParser()protocols::rosetta_scripts::RosettaScriptsParser
set_recursion_limit(utility::options::OptionCollection const &options)protocols::rosetta_scripts::RosettaScriptsParser
substitute_variables_in_stream(std::istream &in, utility::vector1< std::string > const &script_vars, std::stringstream &out)protocols::rosetta_scripts::RosettaScriptsParserstatic
TagCOP typedefprotocols::rosetta_scripts::RosettaScriptsParser
TagCOPs typedefprotocols::rosetta_scripts::RosettaScriptsParser
validate_input_script_against_xsd(std::string const &fname, std::stringstream const &input_xml) const protocols::rosetta_scripts::RosettaScriptsParser
validator_protocols::rosetta_scripts::RosettaScriptsParserprivate
write_ROSETTASCRIPTS_complex_type(utility::tag::XMLSchemaDefinition &)protocols::rosetta_scripts::RosettaScriptsParserstatic
xsd_for_rosetta_scripts()protocols::rosetta_scripts::RosettaScriptsParserstatic
~RosettaScriptsParser() overrideprotocols::rosetta_scripts::RosettaScriptsParser