Rosetta: protocols::frag_picker::scores::ABEGO_SS_Score Class Reference

#include <ABEGO_SS_Score.hh>

Inheritance diagram for protocols::frag_picker::scores::ABEGO_SS_Score:

Inheritance graph

Public Member Functions
	ABEGO_SS_Score (core::Size priority, core::Real lowest_acceptable_value, bool use_lowest, std::string prediction_file_name, core::Size longest_vall_chunk)

	~ABEGO_SS_Score () override

void	do_caching (VallChunkOP) override

bool	cached_score (FragmentCandidateOP f, FragmentScoreMapOP empty_map) override

void	clean_up () override

bool	score (FragmentCandidateOP, FragmentScoreMapOP) override
	Computes the score. More...

Public Member Functions inherited from protocols::frag_picker::scores::CachingScoringMethod
	CachingScoringMethod (core::Size priority, core::Real lowest_acceptable_value, bool use_lowest, std::string name)

bool	score (FragmentCandidateOP, FragmentScoreMapOP) override

Public Member Functions inherited from protocols::frag_picker::scores::FragmentScoringMethod
	FragmentScoringMethod (core::Size priority, core::Real lowest_acceptable_value, bool use_lowest, std::string name)

std::string &	get_score_name ()
	Returns a name of this scoring method. More...

core::Size	get_id ()
	Returns an integer index assigned to this scoring method by a scoring manager. More...

void	set_id (core::Size id)
	Sets a new integer index for this scoring method. More...

core::Size	get_priority ()
	Returns a priority of this scoring method. More...

core::Real	get_min_allowed_score ()
	Returns the lowest acceptable score value for this scoring method. More...

bool	get_use_lowest ()
	Returns the boolean choice on using the above lowest acceptable score value. More...

void	set_min_allowed_score (core::Real lowest_acceptable_value)
	Sets a new value of the lowest acceptable score. More...

Private Attributes
core::Size	query_len_

core::Size	n_classes_

utility::vector1 < quota::ABEGO_SS_MapOP >	maps_

utility::vector1 < utility::vector1< core::Real > >	ratios_

std::string	cached_scores_id_

Matrix	scores_

Additional Inherited Members
Protected Attributes inherited from protocols::frag_picker::scores::FragmentScoringMethod
core::Size	id_

core::Size	priority_

std::string	name_

core::Real	lowest_acceptable_value_

bool	use_lowest_

Constructor & Destructor Documentation

protocols::frag_picker::scores::ABEGO_SS_Score::ABEGO_SS_Score	(	core::Size	priority,
		core::Real	lowest_acceptable_value,
		bool	use_lowest,
		std::string	prediction_file_name,
		core::Size	longest_vall_chunk
	)

inline

References protocols::frag_picker::quota::ABEGO_SS_Config::get_pool_bins(), maps_, n_classes_, protocols::frag_picker::quota::ABEGO_SS_Config::n_columns(), protocols::frag_picker::quota::ABEGO_SS_Config::probability(), query_len_, ratios_, scores_, and protocols::frag_picker::quota::ABEGO_SS_Config::size().

protocols::frag_picker::scores::ABEGO_SS_Score::~ABEGO_SS_Score ( )

inlineoverride

Member Function Documentation

bool protocols::frag_picker::scores::ABEGO_SS_Score::cached_score	(	FragmentCandidateOP	f,
		FragmentScoreMapOP	empty_map
	)

overridevirtual

Reimplemented from protocols::frag_picker::scores::CachingScoringMethod.

References cached_scores_id_, do_caching(), protocols::frag_picker::scores::FragmentScoringMethod::id_, protocols::frag_picker::scores::FragmentScoringMethod::lowest_acceptable_value_, scores_, and protocols::frag_picker::scores::FragmentScoringMethod::use_lowest_.

void protocols::frag_picker::scores::ABEGO_SS_Score::clean_up ( )

inlineoverridevirtual

Implements protocols::frag_picker::scores::CachingScoringMethod.

void protocols::frag_picker::scores::ABEGO_SS_Score::do_caching ( VallChunkOP chunk )

overridevirtual

Implements protocols::frag_picker::scores::CachingScoringMethod.

References cached_scores_id_, maps_, query_len_, ratios_, scores_, and protocols::frag_picker::quota::torsion2big_bin_id().

Referenced by cached_score().

bool protocols::frag_picker::scores::ABEGO_SS_Score::score	(	FragmentCandidateOP	f,
		FragmentScoreMapOP	empty_map
	)

overridevirtual

Computes the score.

Implements protocols::frag_picker::scores::FragmentScoringMethod.

References protocols::frag_picker::scores::FragmentScoringMethod::id_, protocols::frag_picker::scores::FragmentScoringMethod::lowest_acceptable_value_, maps_, ratios_, protocols::frag_picker::quota::torsion2big_bin_id(), and protocols::frag_picker::scores::FragmentScoringMethod::use_lowest_.

Member Data Documentation

std::string protocols::frag_picker::scores::ABEGO_SS_Score::cached_scores_id_

private

Referenced by cached_score(), and do_caching().

utility::vector1<quota::ABEGO_SS_MapOP> protocols::frag_picker::scores::ABEGO_SS_Score::maps_

private

Referenced by ABEGO_SS_Score(), do_caching(), and score().

core::Size protocols::frag_picker::scores::ABEGO_SS_Score::n_classes_

private

Referenced by ABEGO_SS_Score().

core::Size protocols::frag_picker::scores::ABEGO_SS_Score::query_len_

private

Referenced by ABEGO_SS_Score(), and do_caching().

utility::vector1< utility::vector1<core::Real> > protocols::frag_picker::scores::ABEGO_SS_Score::ratios_

private

Referenced by ABEGO_SS_Score(), do_caching(), and score().

Matrix protocols::frag_picker::scores::ABEGO_SS_Score::scores_

private

Referenced by ABEGO_SS_Score(), cached_score(), and do_caching().

The documentation for this class was generated from the following files:

src/protocols/frag_picker/scores/ABEGO_SS_Score.hh
src/protocols/frag_picker/scores/ABEGO_SS_Score.cc