protocols::cluster::ClusterBase Member List

This is the complete list of members for protocols::cluster::ClusterBase, including all inherited members.

add_structure(core::pose::Pose &pose)	protocols::cluster::ClusterBase
apply(core::pose::Pose &pose) override	protocols::cluster::GatherPosesMover	virtual
calculate_distance_matrix()	protocols::cluster::ClusterBase
check_tag(const std::string &query_tag)	protocols::cluster::GatherPosesMover
clean_pose_store()	protocols::cluster::ClusterBase
clear()	protocols::cluster::GatherPosesMover	inline
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const	protocols::moves::Mover	virtual
cluster_radius_	protocols::cluster::ClusterBase	protected
ClusterBase()	protocols::cluster::ClusterBase
clusterlist	protocols::cluster::ClusterBase	protected
create()	protocols::moves::Mover	virtual
create_constraints(std::string prefix, EnsembleConstraints &constraint_maker)	protocols::cluster::ClusterBase
distance_matrix	protocols::cluster::ClusterBase	protected
export_only_low(bool value=false)	protocols::cluster::ClusterBase	inline
export_only_low_	protocols::cluster::ClusterBase	protected
fresh_instance() const	protocols::moves::Mover	virtual
GatherPosesMover()	protocols::cluster::GatherPosesMover
get_additional_output()	protocols::moves::Mover	virtual
get_cluster_list() const	protocols::cluster::ClusterBase	inline
get_cluster_radius()	protocols::cluster::ClusterBase
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_distance_measure(const core::pose::Pose &pose1, const core::pose::Pose &pose2) const	protocols::cluster::GatherPosesMover	virtual
get_filter() const	protocols::cluster::GatherPosesMover
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_median_rms()	protocols::cluster::ClusterBase	inline
get_name() const override	protocols::cluster::ClusterBase	virtual
get_native_pose() const	protocols::moves::Mover
get_pose_list()	protocols::cluster::GatherPosesMover	inline
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_tag_list() const	protocols::cluster::GatherPosesMover	inline
get_type() const	protocols::moves::Mover	inline
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
limit_groups(int limit=-1)	protocols::cluster::ClusterBase
limit_groupsize(int limit=-1)	protocols::cluster::ClusterBase
limit_groupsize(core::Real percent_limit)	protocols::cluster::ClusterBase
limit_total_structures(int limit=-1)	protocols::cluster::ClusterBase
median_rms_	protocols::cluster::ClusterBase	protected
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
name()	protocols::moves::Mover	inlinestatic
nposes() const	protocols::cluster::GatherPosesMover	inline
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data)	protocols::moves::Mover	virtual
population_weight_	protocols::cluster::ClusterBase	protected
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
poselist	protocols::cluster::GatherPosesMover	protected
print_cluster_assignment()	protocols::cluster::ClusterBase
print_cluster_PDBs(std::string prefix)	protocols::cluster::ClusterBase
print_clusters_silentfile(std::string prefix)	protocols::cluster::ClusterBase
print_raw_numbers()	protocols::cluster::ClusterBase
print_summary()	protocols::cluster::ClusterBase
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::moves::Mover	virtual
push_back(const core::pose::Pose &pose)	protocols::cluster::GatherPosesMover	inline
random_limit_groupsize(core::Real percent_limit)	protocols::cluster::ClusterBase
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
remove_highest_energy_member_of_each_group()	protocols::cluster::ClusterBase
remove_singletons()	protocols::cluster::ClusterBase
reset_status()	protocols::moves::Mover
return_lowest_poses_in_clusters()	protocols::cluster::ClusterBase
return_top_poses_in_clusters(core::Size count)	protocols::cluster::ClusterBase
set_cluster_by_all_atom(bool const &setting)	protocols::cluster::GatherPosesMover	inline
set_cluster_by_protein_backbone(bool const &setting)	protocols::cluster::GatherPosesMover	inline
set_cluster_radius(core::Real cluster_radius)	protocols::cluster::ClusterBase
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_filter(core::Real filter)	protocols::cluster::GatherPosesMover
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_population_weight(core::Real population_weight)	protocols::cluster::ClusterBase
set_score_function(core::scoring::ScoreFunctionOP sfxn)	protocols::cluster::GatherPosesMover
set_type(std::string const &setting)	protocols::moves::Mover	inline
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
sort_each_group_by_energy()	protocols::cluster::ClusterBase
sort_groups_by_energy()	protocols::cluster::ClusterBase
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline