| add_evaluation(evaluation::PoseEvaluatorOP) | protocols::jd2::JobOutputter | |
| affixed_numbered_name(JobCOP job) | protocols::jd2::JobOutputter | protected |
| atom_tree_diff_ | protocols::jd2::AtomTreeDiffJobOutputter | private |
| AtomTreeDiffJobOutputter() | protocols::jd2::AtomTreeDiffJobOutputter | |
| bb_precision_ | protocols::jd2::AtomTreeDiffJobOutputter | private |
| bondlen_precision_ | protocols::jd2::AtomTreeDiffJobOutputter | private |
| call_output_observers(core::pose::Pose const &pose, JobOP job) const | protocols::jd2::JobOutputter | |
| clear_evaluators() | protocols::jd2::JobOutputter | |
| dump_pose(std::string const &tag, core::pose::Pose const &pose, std::map< std::string, core::Real > scores, JobCOP job) | protocols::jd2::AtomTreeDiffJobOutputter | private |
| evaluate(core::pose::Pose &pose, std::string tag, core::io::silent::SilentStruct &pss) const | protocols::jd2::JobOutputter | |
| evaluators() const | protocols::jd2::JobOutputter | |
| file(JobCOP job, std::string const &data) override | protocols::jd2::FileJobOutputter | virtual |
| FileJobOutputter() | protocols::jd2::FileJobOutputter | |
| filename(JobCOP) const | protocols::jd2::JobOutputter | inlinevirtual |
| final_pose(JobOP job, core::pose::Pose const &pose, std::string const &tag) override | protocols::jd2::AtomTreeDiffJobOutputter | virtual |
| flush() | protocols::jd2::JobOutputter | virtual |
| job_has_completed(JobCOP job) override | protocols::jd2::AtomTreeDiffJobOutputter | virtual |
| JobOutputter() | protocols::jd2::JobOutputter | |
| last_ref_pose_ | protocols::jd2::AtomTreeDiffJobOutputter | private |
| last_ref_tag_ | protocols::jd2::AtomTreeDiffJobOutputter | private |
| other_pose(JobOP job, core::pose::Pose const &pose, std::string const &tag, int copy_count=-1, bool score_only=false) override | protocols::jd2::AtomTreeDiffJobOutputter | virtual |
| out_ | protocols::jd2::AtomTreeDiffJobOutputter | private |
| outfile_name_ | protocols::jd2::AtomTreeDiffJobOutputter | private |
| output_name(JobCOP job) override | protocols::jd2::AtomTreeDiffJobOutputter | virtual |
| parent typedef | protocols::jd2::FileJobOutputter | |
| sc_precision_ | protocols::jd2::AtomTreeDiffJobOutputter | private |
| scorefile(JobCOP job, core::pose::Pose const &pose, std::string prefix_tag="", std::string suffix_tag="", std::string scorefile="") | protocols::jd2::FileJobOutputter | protectedvirtual |
| scorefile_name() | protocols::jd2::FileJobOutputter | inline |
| set_defaults() | protocols::jd2::FileJobOutputter | |
| set_evaluators(evaluation::PoseEvaluators const &) | protocols::jd2::JobOutputter | |
| set_precision(int bb_precision, int sc_precision, int bondlen_precision) | protocols::jd2::AtomTreeDiffJobOutputter | |
| starting_pose(core::pose::Pose const &) | protocols::jd2::JobOutputter | virtual |
| use_input_ | protocols::jd2::AtomTreeDiffJobOutputter | private |
| use_input_for_ref(bool use_input=true) | protocols::jd2::AtomTreeDiffJobOutputter | |
| used_tags_ | protocols::jd2::AtomTreeDiffJobOutputter | private |
| write_scorefile() const | protocols::jd2::FileJobOutputter | inline |
| ~AtomTreeDiffJobOutputter() override | protocols::jd2::AtomTreeDiffJobOutputter | |
| ~FileJobOutputter() override | protocols::jd2::FileJobOutputter | |
| ~JobOutputter() override | protocols::jd2::JobOutputter | |
1.8.7