core::sequence::CompositeSequence Member List

This is the complete list of members for core::sequence::CompositeSequence, including all inherited members.

add_sequence(SequenceOP seq)	core::sequence::CompositeSequence
append_char(char new_char)	core::sequence::Sequence
append_gap()	core::sequence::Sequence
at(core::Size pos) const	core::sequence::Sequence
clone() const override	core::sequence::CompositeSequence	virtual
CompositeSequence()	core::sequence::CompositeSequence	inline
CompositeSequence(CompositeSequence const &src)	core::sequence::CompositeSequence	inline
delete_position(core::Size pos) override	core::sequence::CompositeSequence	virtual
gap_char(char gap_char)	core::sequence::Sequence
gap_char() const	core::sequence::Sequence
id(std::string new_id)	core::sequence::Sequence
id() const	core::sequence::Sequence
insert_char(core::Size pos, char new_char) override	core::sequence::CompositeSequence	virtual
insert_gap(core::Size pos)	core::sequence::Sequence
is_gap(core::Size pos) const	core::sequence::Sequence
length() const override	core::sequence::CompositeSequence	virtual
n_seqs() const	core::sequence::CompositeSequence
operator<(const Sequence &s) const	core::sequence::Sequence	inline
operator=(CompositeSequence const &rhs)	core::sequence::CompositeSequence	inline
core::sequence::Sequence::operator=(Sequence const &rhs)	core::sequence::Sequence	inline
operator==(const Sequence &s) const	core::sequence::Sequence	inline
operator[](core::Size pos) const	core::sequence::Sequence
read_data(std::istream &in)	core::sequence::Sequence
read_from_file(utility::file::FileName const &)	core::sequence::Sequence	virtual
replace_char(core::Size pos, char new_char)	core::sequence::Sequence	virtual
resnum(core::Size idx) const	core::sequence::Sequence
seq(core::Size idx) const	core::sequence::CompositeSequence
seqs() const	core::sequence::CompositeSequence
seqs_	core::sequence::CompositeSequence	private
sequence(std::string sequence)	core::sequence::Sequence
sequence() const	core::sequence::Sequence
Sequence()	core::sequence::Sequence	inline
Sequence(std::string const &seq, std::string const &id, core::Size start=1)	core::sequence::Sequence	inline
Sequence(core::pose::Pose const &pose)	core::sequence::Sequence
Sequence(Sequence const &src)	core::sequence::Sequence	inline
spacer_positions(utility::vector1< Size > const &spacer_positions)	core::sequence::Sequence
spacer_positions() const	core::sequence::Sequence
start(core::Size new_start)	core::sequence::Sequence
start() const	core::sequence::Sequence
string typedef	core::sequence::CompositeSequence	private
to_string() const override	core::sequence::CompositeSequence	virtual
type() const override	core::sequence::CompositeSequence	virtual
ungapped_length() const	core::sequence::Sequence
ungapped_sequence() const	core::sequence::Sequence
~CompositeSequence() override	core::sequence::CompositeSequence
~Sequence() override	core::sequence::Sequence